Gene detail

Detail information of GWHGAAZE006086

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008238847.1	3.0768E-169	PREDICTED: lysine-specific demethylase 5D isoform X2 [Prunus mume]
Swissprot	tr\|F4I6G4\|JMJ18_ARATH	2E-51	Lysine-specific demethylase JMJ18
trEMBL	tr\|M5WEA5\|M5WEA5_PRUPE	3E-167	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11636.1}
TAIR10	AT1G63490.1	3E-111	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19110414	19128064	-
GWHAAZE00000002	mRNA	19110414	19128064	-
GWHAAZE00000002	exon	19128008	19128064	-
GWHAAZE00000002	exon	19126255	19126377	-
GWHAAZE00000002	exon	19125346	19125403	-
GWHAAZE00000002	exon	19125077	19125213	-
GWHAAZE00000002	exon	19112258	19112416	-
GWHAAZE00000002	exon	19112076	19112189	-
GWHAAZE00000002	exon	19111114	19111293	-
GWHAAZE00000002	exon	19110414	19110608	-
GWHAAZE00000002	CDS	19128008	19128064	-
GWHAAZE00000002	CDS	19126255	19126377	-
GWHAAZE00000002	CDS	19125346	19125403	-
GWHAAZE00000002	CDS	19125077	19125213	-
GWHAAZE00000002	CDS	19112258	19112416	-
GWHAAZE00000002	CDS	19112076	19112189	-
GWHAAZE00000002	CDS	19111114	19111293	-
GWHAAZE00000002	CDS	19110414	19110608	-

Transcript Sequence
>GWHTAAZE006094 GGAGAACCAAAATGCTGGTACAGTGTCCCTGGCAGTGAAACCCGTGCTTTTGAAAAGGTGATGCGGGACAGTCTTCCCGATTTGTTTGATGCTCAACCCGATTTGCTCTTCCAGCTTGTTACCATGCTGAATCCATCTGTTCTGCAACAAAATAATGTTCCAGTTTACAGCGTATTGCAGGAGCCAGGGAACTTTGTTATCACCTTCCCCAGATCTTATCATGGAGGGTTCAATTTTGGCTTAAATTGTGCAGAAGCAGTCAATTTTGCTCCTGCTGATTGGCTACCCCATGGCGGTTTTGGAGCAGGACTTTATCAGCTTTATCGCAAAGCTGCTGTATTATCTCATGAGGAGCTCCTCTGTGTGGTAGCTGAGAGTGATTTTGAGAGCAGAGTATCTCATTACTTGAAGAAGGAATTGCTTAGAATATATGATAAAGAAAGAACTTGGAGAGAGCGGCTTTGGAGAAATGGCATCACTAGCTCTTCTCCAATGGCACCTCGGAAGCAGCCTAAGTACGTGGGTATTGAAGAGCTTTTACTCACCTCATCTTTTTTGAAGGATCCTACGTGCATTATATGCCAGCAATTTTTGTATCTTTCTGCTGTTACCTGCCGCTGTCGACCATCTGCTTTTGTTTGTCTAGAGCATTGGGAACACCTCTGTGAATGCAAGCCGGACAAACGCCGTGTCCTTTATCGTCGTACATTGGCTCAATTGAAGGATTTGGTGCTTATGGCAGAGAGACACAACACCCAGGAGGCTTCCAATAGAAACTTGCGAAGGCAACTTTTATGTTCTAGTGAATCAGAGTCTTTGTCAAGAAAGGTAAAGGGTGTCAATGCCACTTTTGCACAACTTGCTGAAGAATGGCTCCTGAGGTCGTGTAAGATTCTTCAGATGCCATATTCCAATGATGTTTACGTTGGTGCACTAAAGAAAGCTGAGCAGTTTCTTTGGGCTGGTTCTGAAATGGATCCTGTGAGCTTTTTTTCTTCAACTGATTATTTTGTTTCTCCTTAA

Network for GWHGAAZE006086

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.23	JmjC	1	89	2.70E-27
PF02928.17	zf-C5HC2	191	242	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.211
	SRR3591706	second leaf	11.625
	SRR3591707	mature leaf	9.962
	SRR3591708	Shoot apex	9.993
	SRR3591709	Stem	13.734
	SRR3591710	White floral bud	20.109
	SRR3591711	White flower	18.354
	SRR3591712	Green floral bud	15.297
	SRR3591713	Yellow flower	17.717
SRP173429	SRR8316895	Juvenile bud stage	10.313
	SRR8316896	Juvenile bud stage	12.477
	SRR8316897	Juvenile bud stage	4.756
	SRR8316894	Third green stage	5.659
	SRR8316900	Third green stage	12.737
	SRR8316901	Third green stage	12.489
	SRR8316898	Complete white stage	2.864
	SRR8316899	Complete white stage	9.922
	SRR8316903	Complete white stage	10.834
	SRR8316902	Silver flowering stage	6.105
	SRR8316904	Silver flowering stage	11.127
	SRR8316905	Silver flowering stage	5.326
	SRR8316906	Gold flowering stage	15.077
	SRR8316907	Gold flowering stage	15.593
	SRR8316908	Gold flowering stage	13.794
SRP132670	SRR6706286	Control	16.166
	SRR6706287	Light intensity 50%	17.282
	SRR6706288	Light intensity 20%	20.747
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.534
	CNS0095593	Slightly white alabastrum(diploid) 2	1.758
	CNS0095594	Slightly white alabastrum(diploid) 3	3.458
	CNS0095595	Whole white alabastrum(diploid) 2	3.311
	CNS0095596	Whole white alabastrum(diploid) 3	2.712
	CNS0095597	Whole white alabastrum(diploid) 4	3.452
	CNS0095598	Silvery flower (diploied) 1	5.943
	CNS0095599	Silvery flower (diploied) 2	4.377
	CNS0095600	Silvery flower (diploied) 3	13.744
	CNS0095601	Golden flower (diploid) 1	3.917
	CNS0095602	Golden flower (diploid) 2	14.446
	CNS0095603	Golden flower (diploid) 3	15.326
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.917
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.477
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.898
	CNS0095610	Silvery flower (tetraploid) 1	17.575
	CNS0095611	Silvery flower (tetraploid) 2	17.366
	CNS0095612	Silvery flower (tetraploid) 3	20.662
	CNS0095613	Golden flower (tetraploid) 1	6.397
	CNS0095614	Golden flower (tetraploid) 2	13.638
	CNS0095615	Golden flower (tetraploid) 3	22.159
CRA001975	CRR073297	Stem 1	13.337
	CRR073298	Stem 2	13.350
	CRR073299	Stem 3	7.319
	CRR073300	Leaf 1	10.369
	CRR073301	Leaf 2	8.777
	CRR073302	Leaf 3	5.205
	CRR073303	Juvenile bud 1	4.627
	CRR073304	Juvenile bud 2	5.200
	CRR073305	Juvenile bud 3	7.063
	CRR073306	Third green 1	4.188
	CRR073307	Third green 2	1.943
	CRR073308	Third green 3	5.261
	CRR073309	Second white 1	2.854
	CRR073310	Second white 2	7.427
	CRR073311	Second white 3	11.697
	CRR073312	Silver flowering 1	5.657
	CRR073313	Silver flowering 2	7.343
	CRR073314	Silver flowering 3	7.616
	CRR073315	Gold flowering 1	1.809
	CRR073316	Gold flowering 2	5.123
	CRR073317	Gold flowering 3	1.460
	CRR073318	Tawny withering 1	3.525
	CRR073319	Tawny withering 2	3.101
	CRR073320	Tawny withering 3	5.049