Gene detail

Detail information of GWHGAAZE006073

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002269839.1	PREDICTED: probable copper-transporting ATPase HMA5 [Vitis vinifera]
Swissprot	tr\|Q9SH30\|HMA5_ARATH	Probable copper-transporting ATPase HMA5
trEMBL	tr\|F6HUD3\|F6HUD3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58356.1}
TAIR10	AT1G63440.1	heavy metal atpase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18964605	18971638	+
GWHAAZE00000002	mRNA	18964605	18971638	+
GWHAAZE00000002	exon	18964605	18964907	+
GWHAAZE00000002	exon	18966901	18968292	+
GWHAAZE00000002	exon	18968626	18968880	+
GWHAAZE00000002	exon	18969023	18969145	+
GWHAAZE00000002	exon	18969643	18970122	+
GWHAAZE00000002	exon	18971222	18971638	+
GWHAAZE00000002	CDS	18964605	18964907	+
GWHAAZE00000002	CDS	18966901	18968292	+
GWHAAZE00000002	CDS	18968626	18968880	+
GWHAAZE00000002	CDS	18969023	18969145	+
GWHAAZE00000002	CDS	18969643	18970122	+
GWHAAZE00000002	CDS	18971222	18971638	+

Transcript Sequence
>GWHTAAZE006081 ATGGCGAGCAAGCTATTTTCTCTAGCATGTATACGCAGTGAGAACTATGGCCATGACTTATCGCCGAGGCCACACTATCCGTCGATGCCTAAGTACCCTAAAGGAGTTTCCTCATCCGATGAGGAGAAGAAGATGGAGGAGGGAACCGAGTCCAAAGCTCTCTTCTCCGTAATTGGAATGACCTGTTCTGCCTGCGCCGGCTCCGTCGAGAAGGCTGTGAAGCGCCTCCCCGGTATCAAGGAGGCCGTCGTTGATGTTATGAACGATCGTGCTCAGGTCCTCTTTTACCCTTCCTTCGTTAATGAGGAAACGATCCGTGAGACCATCGAAGATGTCGGATTTCAAGCCACTTTAATTGAAGAAGAGCTTAATGAGAAATCCACACAAATATGTCGAATCCGCATTAGGGGAATGACTTGCACATCTTGCTCCACAACTGTCGAATCTGCTTTGCAGGTTATACCTGGAGTACAAAAGGCCCGAGTGGCATTAGCGACTGAAGAAGCTGAAGTCCACTACGATCCAAAGATGTTGAGCTACAATCAGCTTTTGGAGGCAATAGAAGATACTGGGTTTGAAGCCATACTGATTAGCACAGGTGAAGATAGGAGCAAAATACAATTAAAAGTTGAAGGATTTCGAACTGATAATTCCATGAGGATGATCGAAAGGTCTCTTGAAGCACTTCCTGGAGTCGAAGATATAGACGTCGATCCTGAGCTCAACAAGTTTTCTCTTTCTTACAAGGCAGACATTACGGGCCCCAGGAATTTCATTCAAGTGATTGAGTCAACCGGGTCTGGGCGTTTCAAGGCAAAGATATTCCCTGAAGGAGGAGGAAGAAATGATCATAAGAAGGAAGAAATTAAGCAATACTATAGATCCTTTATGTGGAGTTTGGTTTTTACAATTCCAGTATTCTTAACCTCCATGGTCTTTATGTATATCCCCGGAATTAAACATGGTTTGGATACCAAAGTGGTCAATATGCTGACCATTGGCGAGCTTTTGAGGTGGATACTAGCTACTCCAGTACAGTTCATCATTGGCCGAAGATTCTACACTGGTTCCTACAAATCACTGTGCCACGGTTCTGCAAATATGGATGTTTTGATTGCCTTGGGAACAAACGCAGCCTACTTTTATTCAGTCTACTCGGTGTTGAGAGCTGCTACTTCTCCACATTTCAAGTCGACTGATTTCTTCGAAACTAGCGCAATGCTCATTTCCTTTATTCTGCTTGGGAAGTATTTAGAGGTCTTGGCCAAGGGAAAAACTTCCGAGGCCATTGCCAAGCTTATGAACTTGACCCCTGATACAGCAATGGTGTTGACCCTTGATAACGGAGGGAATGTGATAAGCGAGGAAGAAATAGACAGTCGGTTGATACAAAAGAATGACGTGATCAAAATCATTCCTGGTGCAAAAGTAGCTTCAGATGGTTTCGTCATTTGGGGACAAAGCCATGTGAATGAGAGCATGATTACGGGGGAAGCCCGACCGGTGGCCAAGAGGAAGGGCGATACGGTAATTGGCGGCACTGTGAATGAAAATGGGGTTTTACATATTAAGGCGACACGGGTTGGATCAGAGAGTGCCCTATCACAGATTGTTCGACTTGTTGAATCAGCACAAATGGCTAAAGCTCCGGTTCAGAAATTCGCCGATCGCATTTCCAAATATTTTGTGCCCATGGTTATAGTGTTCTCGTTTACGACTTGGCTTGCGTGGTTTTTAGCTGGAAAGTTAAATCGGTACCCGAAATCTTGGATACCTTCTTCCATGGATAGCTTTCAGCTTGCACTCCAATTTGGCATCTCTGTTATGGTTATAGCTTGCCCATGTGCTCTAGGCTTGGCTACTCCAACTGCTGTAATGGTTGGTACTGGAGTTGGTGCTTCTCAAGGTGTTCTTATCAAAGGAGGCCAGGCTCTAGAAAGCACACACAAGGTGAACTACATTGTGTTTGATAAGACAGGAACTCTCACAATTGGAAAGCCATTGGTCGTTAGCACAAGACTGTTGAAAAATATGGTACTTAGAGAATTCTATGAGTTGATTGCTGCAGCTGAGGTAAACAGTGAGCATCCCTTGGCCAAGGCCGTTGTTGAGTATGCCAAGAAATTCGGTGAAGATGAAGAGAACCCCGTCTGGCCCGAAGCCCGAGACTTTCAGTCCATAACTGGCCATGGCGTAAAGGCTATTGTTCGCAACAAAGAAATAATTGTTGGTAACAAGAGCTTGATGTTGGACCAAAACATTGAAATTCCAATTGATGCTGAAGAAATGCTAGCAGAAACAGAAGGATTGGCTCAAACCGGGATTCTTGTATCTATAGACAGGGAGCTGACTGGAGTTCTTGCCATATCTGACCCCTTGAAGCCTAGTGCTCGTGAAGTAATCTCCGTTCTCAAGTCTATGAAAGTAACGAGTATAATGGTGACTGGTGACAATTGGGGTACTGCGAATTCCATTGCCAAGGAAGTCGGAATTGACCGTGTCTTTGCGGAGGCCAAACCTGAAGATAAAGCGAAGAAAGTGAAGGAGTTACAGGCTTTGGGATATACTGTGGCAATGGTGGGAGATGGAATCAACGACTCACCAGCTCTTGTTGCCGCAGATGTGGGAATGGCGATTGGGGCCGGCACAGACATTGCCATTGAAGCAGCGGACATTGTTCTAATGAAGAGCAACTTGGAGGATGTGATAACCGCCATAGATCTCTCTAGGAGAACCTTCTCTCGGATCCGTTTAAACTACATTTGGGCTCTCGGTTATAATGTCCTCGGTATCCCAATAGCTGCTGGGGTCCTTTTCCCCTCCACTGGGTTTCGCCTACCACCTTGGATTGCCGGAGCCGCAATGGCAGCCTCATCAGTGAGCGTAGTTTGTTGCTCTCTGTTGTTGAAGTATTACAAGAGGCCCAAAGTGCTCGAGACGCTCGAGATACGAGGAATAACAGTTGAGTGA

Network for GWHGAAZE006073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.27	HMA	55	114	2.70E-13
PF00403.27	HMA	133	193	1.50E-14
PF00122.21	E1-E2_ATPase	436	633	1.10E-48
PF00702.27	Hydrolase	651	874	1.80E-43

Protein Sequence

>GWHPAAZE006077
MASKLFSLACIRSENYGHDLSPRPHYPSMPKYPKGVSSSDEEKKMEEGTESKALFSVIGMTCSACAGSVEKAVKRLPGIKEAVVDVMNDRAQVLFYPSFVNEETIRETIEDVGFQATLIEEELNEKSTQICRIRIRGMTCTSCSTTVESALQVIPGVQKARVALATEEAEVHYDPKMLSYNQLLEAIEDTGFEAILISTGEDRSKIQLKVEGFRTDNSMRMIERSLEALPGVEDIDVDPELNKFSLSYKADITGPRNFIQVIESTGSGRFKAKIFPEGGGRNDHKKEEIKQYYRSFMWSLVFTIPVFLTSMVFMYIPGIKHGLDTKVVNMLTIGELLRWILATPVQFIIGRRFYTGSYKSLCHGSANMDVLIALGTNAAYFYSVYSVLRAATSPHFKSTDFFETSAMLISFILLGKYLEVLAKGKTSEAIAKLMNLTPDTAMVLTLDNGGNVISEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPMVIVFSFTTWLAWFLAGKLNRYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVNYIVFDKTGTLTIGKPLVVSTRLLKNMVLREFYELIAAAEVNSEHPLAKAVVEYAKKFGEDEENPVWPEARDFQSITGHGVKAIVRNKEIIVGNKSLMLDQNIEIPIDAEEMLAETEGLAQTGILVSIDRELTGVLAISDPLKPSAREVISVLKSMKVTSIMVTGDNWGTANSIAKEVGIDRVFAEAKPEDKAKKVKELQALGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRRTFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKVLETLEIRGITVE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17686	copA, ctpA, ATP7	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0006812	biological_process	cation transport
GO:0016021	cellular_component	integral component of membrane
GO:0046872	molecular_function	metal ion binding
GO:0005507	molecular_function	copper ion binding
GO:0000166	molecular_function	nucleotide binding
GO:0019829	molecular_function	ATPase-coupled cation transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.187
	SRR3591706	second leaf	0.678
	SRR3591707	mature leaf	0.042
	SRR3591708	Shoot apex	0.168
	SRR3591709	Stem	0.412
	SRR3591710	White floral bud	0.763
	SRR3591711	White flower	0.342
	SRR3591712	Green floral bud	1.571
	SRR3591713	Yellow flower	1.291
SRP173429	SRR8316895	Juvenile bud stage	28.419
	SRR8316896	Juvenile bud stage	46.840
	SRR8316897	Juvenile bud stage	8.023
	SRR8316894	Third green stage	13.055
	SRR8316900	Third green stage	2.230
	SRR8316901	Third green stage	5.559
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	0.333
	SRR8316903	Complete white stage	0.086
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.344
	SRR8316907	Gold flowering stage	1.363
	SRR8316908	Gold flowering stage	0.704
SRP132670	SRR6706286	Control	6.354
	SRR6706287	Light intensity 50%	7.309
	SRR6706288	Light intensity 20%	3.920
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.616
	CNS0095593	Slightly white alabastrum(diploid) 2	0.812
	CNS0095594	Slightly white alabastrum(diploid) 3	10.464
	CNS0095595	Whole white alabastrum(diploid) 2	0.462
	CNS0095596	Whole white alabastrum(diploid) 3	0.705
	CNS0095597	Whole white alabastrum(diploid) 4	0.686
	CNS0095598	Silvery flower (diploied) 1	2.054
	CNS0095599	Silvery flower (diploied) 2	7.605
	CNS0095600	Silvery flower (diploied) 3	0.069
	CNS0095601	Golden flower (diploid) 1	0.298
	CNS0095602	Golden flower (diploid) 2	2.799
	CNS0095603	Golden flower (diploid) 3	2.602
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.502
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.451
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.566
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.309
	CNS0095610	Silvery flower (tetraploid) 1	0.219
	CNS0095611	Silvery flower (tetraploid) 2	0.709
	CNS0095612	Silvery flower (tetraploid) 3	3.881
	CNS0095613	Golden flower (tetraploid) 1	3.562
	CNS0095614	Golden flower (tetraploid) 2	1.303
	CNS0095615	Golden flower (tetraploid) 3	22.648
CRA001975	CRR073297	Stem 1	24.322
	CRR073298	Stem 2	27.603
	CRR073299	Stem 3	31.581
	CRR073300	Leaf 1	0.968
	CRR073301	Leaf 2	0.362
	CRR073302	Leaf 3	0.765
	CRR073303	Juvenile bud 1	0.414
	CRR073304	Juvenile bud 2	0.156
	CRR073305	Juvenile bud 3	0.081
	CRR073306	Third green 1	0.019
	CRR073307	Third green 2	1.441
	CRR073308	Third green 3	0.306
	CRR073309	Second white 1	1.068
	CRR073310	Second white 2	0.922
	CRR073311	Second white 3	2.952
	CRR073312	Silver flowering 1	10.504
	CRR073313	Silver flowering 2	10.636
	CRR073314	Silver flowering 3	16.808
	CRR073315	Gold flowering 1	0.275
	CRR073316	Gold flowering 2	0.093
	CRR073317	Gold flowering 3	0.101
	CRR073318	Tawny withering 1	0.110
	CRR073319	Tawny withering 2	0.125
	CRR073320	Tawny withering 3	0.359