Gene detail

Detail information of GWHGAAZE006060

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACZ34296.1	7.4148E-120	broad substrate reductase/dehydrogenase [Artemisia annua]
Swissprot	tr\|Q9ZUH5\|SDR2B_ARATH	6E-80	Short-chain dehydrogenase/reductase 2b
trEMBL	tr\|D1MI43\|D1MI43_ARTAN	3E-120	Broad substrate reductase/dehydrogenase {ECO:0000313\|EMBL:ACZ34296.1}
TAIR10	AT2G24190.2	4E-61	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18748710	18750953	+
GWHAAZE00000002	mRNA	18748710	18750953	+
GWHAAZE00000002	exon	18748710	18748744	+
GWHAAZE00000002	exon	18748824	18749091	+
GWHAAZE00000002	exon	18749748	18749822	+
GWHAAZE00000002	exon	18750318	18750473	+
GWHAAZE00000002	exon	18750591	18750953	+
GWHAAZE00000002	CDS	18748710	18748744	+
GWHAAZE00000002	CDS	18748824	18749091	+
GWHAAZE00000002	CDS	18749748	18749822	+
GWHAAZE00000002	CDS	18750318	18750473	+
GWHAAZE00000002	CDS	18750591	18750953	+

Transcript Sequence
>GWHTAAZE006068 ATGGGAGAAACCACTACCATTTCTACATACAAGAGAGGTGCTGTGGTTACTGGAGCCAACAAAGGAATTGGACTCGAGATATGTCGACAACTAGCTTCTAATGGAGTTAAAGTGATATTAACTGCCAGGGATGAGAAGGGTGCTGAAGCTATTGAAAACCTTAAAGCTTCTAAGCTCCGTGATGTGGTCTTTCATCAGCTCGACGTAAAAGATCCTGCCAGTATTGCTTCACTGACAAGATATGTAGAATCTGAGTTCAAGAAACTTGATATTCTGGTGGGTAAAAGACCACACTCTCTCTCTGTGAATAATGCAGTGGTAAATGGGCTTATTATTGACATTGAAGCCTTCAGAGCCTTTAAACTTGGAGGGGGGATTGTGACGGAAGAGAATACCGATTTACTGGGTGGGATTATGGTACAGACCTACCAAAAAGCGGAAGAGTGTATCGAAACAAATTACTACGGAACCAAAGGAGTGACTGAAGCGCTCCTTCCTCTTCTTCAACTCTCCAAATCAGCAAGAATAGTGAACTTTATCCACAACAAAAAGGTGAACGTCGAAAACCTAACAGAAGAGAAAATAGATGAGATTCTGCAGTGGTTTTTGAGAGATTTGAAGGGTAATAAGCTGAAGGGAAATGGTTGGCCTATTACGATATCTGCTTATAAGGTTTCAAAAGCCGCCATCAGTGCTCATACAAGAGTTATAGCAAGGAGATTTTCTAATATAATTGTCAATTGTGTACATCCTGGATACGTCAGAACGGATATTTCAACTAATATGGGAAAGTTGAGCCCTGAGGAAGGTGCTAAAGCTCCGGTAATGCTGCCTTTATTGCCTAATGGTAGTCCATCTGGTCTCTACTTCGACGAGATTCACTCATCTACCTTTTGA

Network for GWHGAAZE006060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	14	178	1.20E-19
PF13561.7	adh_short_C2	221	274	4.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.548
	SRR3591706	second leaf	12.147
	SRR3591707	mature leaf	23.040
	SRR3591708	Shoot apex	2.941
	SRR3591709	Stem	7.373
	SRR3591710	White floral bud	0.093
	SRR3591711	White flower	0.284
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.329
SRP173429	SRR8316895	Juvenile bud stage	0.707
	SRR8316896	Juvenile bud stage	0.403
	SRR8316897	Juvenile bud stage	1.651
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.102
	SRR8316901	Third green stage	0.056
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	2.638
	SRR8316904	Silver flowering stage	1.670
	SRR8316905	Silver flowering stage	0.838
	SRR8316906	Gold flowering stage	2.024
	SRR8316907	Gold flowering stage	3.168
	SRR8316908	Gold flowering stage	1.488
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.073
	CNS0095593	Slightly white alabastrum(diploid) 2	0.338
	CNS0095594	Slightly white alabastrum(diploid) 3	0.153
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.068
	CNS0095597	Whole white alabastrum(diploid) 4	0.001
	CNS0095598	Silvery flower (diploied) 1	2.873
	CNS0095599	Silvery flower (diploied) 2	2.433
	CNS0095600	Silvery flower (diploied) 3	0.645
	CNS0095601	Golden flower (diploid) 1	0.487
	CNS0095602	Golden flower (diploid) 2	1.258
	CNS0095603	Golden flower (diploid) 3	0.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.569
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.375
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.177
	CNS0095610	Silvery flower (tetraploid) 1	5.630
	CNS0095611	Silvery flower (tetraploid) 2	4.107
	CNS0095612	Silvery flower (tetraploid) 3	0.005
	CNS0095613	Golden flower (tetraploid) 1	2.004
	CNS0095614	Golden flower (tetraploid) 2	3.968
	CNS0095615	Golden flower (tetraploid) 3	3.365
CRA001975	CRR073297	Stem 1	0.316
	CRR073298	Stem 2	0.278
	CRR073299	Stem 3	0.094
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.050
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.151
	CRR073316	Gold flowering 2	3.634
	CRR073317	Gold flowering 3	1.282
	CRR073318	Tawny withering 1	0.046
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.182