Gene detail

Detail information of GWHGAAZE006059

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACN87274.1	1.2803E-123	short chain dehydrogenase/reductase [Chelidonium majus]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	4E-108	(+)-neomenthol dehydrogenase
trEMBL	tr\|C0LZ69\|C0LZ69_CHEMJ	5E-124	Short chain dehydrogenase/reductase {ECO:0000313\|EMBL:ACN87274.1} (Fragment)
TAIR10	AT3G61220.1	1E-82	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18745898	18747683	+
GWHAAZE00000002	mRNA	18745898	18747683	+
GWHAAZE00000002	exon	18745898	18746143	+
GWHAAZE00000002	exon	18746746	18746820	+
GWHAAZE00000002	exon	18746898	18747080	+
GWHAAZE00000002	exon	18747306	18747683	+
GWHAAZE00000002	CDS	18745898	18746143	+
GWHAAZE00000002	CDS	18746746	18746820	+
GWHAAZE00000002	CDS	18746898	18747080	+
GWHAAZE00000002	CDS	18747306	18747683	+

Transcript Sequence
>GWHTAAZE006067 GTAGCAGTAGTTACAGGGGGTAACAAAGGAATTGGATTAGAGATATGTAAACAGTTAGCTCGCAATGATGTGTTCGTGGTACTAACAGCAAGAGATGAAAAGAGGGGCACTGAAGCTGTTCACAATCTCAAAGCCACTAATGGCCTTTCTAATGTAGTTTTCCACCAGCTTGATGTCACTACTCCTGCTACTATTGCTTCCTTGTCAGATTTCATCAAAACCCAATTTGGAAAGCTTGACATATTGGTGAACAACGCTGCGGTCACTGGAGTCATTACAGATGCAGAGGCCTTCTCTAGCTTAAATCTCAAAGCCGGCGAGGTAGTAGGTGCAAAGGCTTCTTTGGCAAAAAATGTCATGCAACAAACTTATGAAACCGCTGAGGGGTGCCTGCGGACAAATTACTTCGGTCCCAAACAACTGACTCAAGCTCTCATTCCGCTGTTGTTGCTATCCAACTCCGCAAGAATAGTTAACATCTCTTCAGCCTTGGGACAATTAAAGAATGTTTCAAATGAGAGAGCGACGAAGGTACTGGGTGATGTGGATAGACTGACGGAAGAGAGAGTAGACGAGATAGTGCGTGGTTTTCTTGAGGATGCTAAAGAGGATTTGTTGGAGAAGAAAGGGTGGCCTATTACTCTATCTGCTTATATACTATCTAAAGCTGTTCTTAATGCCTACACAAGGATTCTGGCCAAGAAGTATACAGCTTTCTGCATAAATGCAGTTAGCCCTGGTTTTGTGAAAACAGATATGAGCCACAATAATGGGCACTACACTGTGGAAGAAGGTGCAAGAGGACCCGTTATGATGGCACTAGTTCCTGATGGTGGCCCTTCTGGCTGCTTCTTCTTTCAGACTCAACAATCAAACTTTTGA

Network for GWHGAAZE006059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	1	169	4.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.158
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.211
	SRR3591709	Stem	0.098
	SRR3591710	White floral bud	1.426
	SRR3591711	White flower	0.729
	SRR3591712	Green floral bud	0.131
	SRR3591713	Yellow flower	0.910
SRP173429	SRR8316895	Juvenile bud stage	0.176
	SRR8316896	Juvenile bud stage	0.274
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.314
	SRR8316901	Third green stage	0.113
	SRR8316898	Complete white stage	0.176
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	1.127
	SRR8316904	Silver flowering stage	1.456
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.772
	SRR8316907	Gold flowering stage	1.145
	SRR8316908	Gold flowering stage	0.340
SRP132670	SRR6706286	Control	0.120
	SRR6706287	Light intensity 50%	0.167
	SRR6706288	Light intensity 20%	0.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.419
	CNS0095593	Slightly white alabastrum(diploid) 2	1.317
	CNS0095594	Slightly white alabastrum(diploid) 3	1.650
	CNS0095595	Whole white alabastrum(diploid) 2	2.221
	CNS0095596	Whole white alabastrum(diploid) 3	0.182
	CNS0095597	Whole white alabastrum(diploid) 4	1.276
	CNS0095598	Silvery flower (diploied) 1	0.039
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.383
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.070
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.623
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.488
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.559
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.287
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.107
	CNS0095610	Silvery flower (tetraploid) 1	0.515
	CNS0095611	Silvery flower (tetraploid) 2	0.268
	CNS0095612	Silvery flower (tetraploid) 3	0.148
	CNS0095613	Golden flower (tetraploid) 1	0.882
	CNS0095614	Golden flower (tetraploid) 2	1.581
	CNS0095615	Golden flower (tetraploid) 3	3.313
CRA001975	CRR073297	Stem 1	0.781
	CRR073298	Stem 2	0.235
	CRR073299	Stem 3	0.254
	CRR073300	Leaf 1	0.143
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.044
	CRR073303	Juvenile bud 1	0.157
	CRR073304	Juvenile bud 2	0.048
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.241
	CRR073307	Third green 2	0.951
	CRR073308	Third green 3	0.853
	CRR073309	Second white 1	0.285
	CRR073310	Second white 2	0.101
	CRR073311	Second white 3	0.121
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.527
	CRR073317	Gold flowering 3	0.191
	CRR073318	Tawny withering 1	0.469
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000