Gene detail

Detail information of GWHGAAZE006048

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002274590.2	PREDICTED: LOW QUALITY PROTEIN: GMP synthase [glutamine-hydrolyzing] [Vitis vinifera]
trEMBL	tr\|F6HUC3\|F6HUC3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58346.1}
TAIR10	AT1G63660.1	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18498362	18502321	+
GWHAAZE00000002	mRNA	18498362	18502321	+
GWHAAZE00000002	exon	18498362	18498625	+
GWHAAZE00000002	exon	18498877	18498916	+
GWHAAZE00000002	exon	18500249	18500429	+
GWHAAZE00000002	exon	18500865	18501240	+
GWHAAZE00000002	exon	18501624	18501755	+
GWHAAZE00000002	exon	18501832	18502007	+
GWHAAZE00000002	exon	18502198	18502321	+
GWHAAZE00000002	CDS	18498362	18498625	+
GWHAAZE00000002	CDS	18498877	18498916	+
GWHAAZE00000002	CDS	18500249	18500429	+
GWHAAZE00000002	CDS	18500865	18501240	+
GWHAAZE00000002	CDS	18501624	18501755	+
GWHAAZE00000002	CDS	18501832	18502007	+
GWHAAZE00000002	CDS	18502198	18502321	+

Transcript Sequence
>GWHTAAZE006056 TTGGTGGTGCAGAGGCTGGGTGGGGTGGTTAGGGTTGGGGAGAAGCAGGAATATGGGAGAATGGTAATTGAAGTTGTAAAGAAGGATTGTGGATTGTTTGGGTATGAGAGGGTTGGGGATAGTCAGGTTGTTTGGATGAGTCATGGTGATGAGGCCGTGGAATTGCCTGTCGGGTTTGAGGTTGTGGCGCAGAGCCAGCAGGGGGTTGTGGCCGCTGTCGAGTGTCCCGGGAGAAGGTTTTATGGCCTTCAATATCATCCCGAGGATGTCTCTGCTGCTGTTTATCTTATGTCTCAATCAAGAGGCTGGAAGATGGAAGATGTGCTCGAAGAAGAAATCAAAGTTATCAATCGCTTGGTTGCCCCTGAAGAACATGTCATTTGTGCATTATCTGGCGGTGTGGATTCAACAGTTGCAGCCACTCTTGTTCACAAGGCAATTGGAGATAGGCTTCACTGTATTTTTGTGGATAATGGTTTATTGAGGTATAAGGAGAGAGAACGGGTGATGAAGACATTTGAAAGGGATCTTCATTTACCTGTCACCTGTGTTGACGCAACAGAACAATTTCTTAGCAAGCTGAAGGGTGTGGTAGATCCTGAGATGAAGAGGAAAATAATTGGAAAGGAGTTCATCTGTATATTTGATTCTTTTGCTCAAGACTTAGAGCATAAATTGGGGAATAGACCCGCTTACTTGGTCCAAGGAACCTTATATCCGGATGTAATTGAATCTTGCCCACCACCTGGAAGTGGAAGAACCCACTCTCATACAATCAAGAGCCACCACAATGTTGGTGGACTTCCCAAGAACATGAAATTGAAGCTCATTGAACCACTTAAATTATTGTTCAAGGATGAGGTTCGTGAACTGGGGAGGATCTTGGATGTGCCAGTGGGATTTCTAAAGCGTCACCCTTTCCCAGGGCCTGGCCTTGCAGTGCGAGTTTTGGGCGATGTGACAGAAGGAAATGCCCTTGATATCCTTCGCCAGGTGGATGAGATATTCATTCAGTCAATAAAGGATGCTGGTATTTACGATTCTATATGGCAAGCGTTTGCTGTGTTTTTGCCAATAAGATCAGTCGGGGTTCAAGGAGATCAAAGAACGCATTCTCATGTTGTTGCACTTAGAGCTGTCACCAGTCAAGATGGAATGACAGCAGATTGGTTCAATTTTGAACACAAGTTCCTTGATGATGTGGCTAGAAAGATATGCAATAGCGTTAGTGGTGTAAATCGGGTTGTTCAAGACATTACATCAAAGCCTCCCTCAACAATTGAGTGGGAATGA

Network for GWHGAAZE006048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.29	GATase	2	91	1.50E-09
PF00958.23	GMP_synt_C	339	429	2.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01951	guaA, GMPS	Metabolic pathways	map01100
		Purine metabolism	map00230
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0006164	biological_process	purine nucleotide biosynthetic process
GO:0006177	biological_process	GMP biosynthetic process
GO:0005524	molecular_function	ATP binding
GO:0016462	molecular_function	pyrophosphatase activity
GO:0003922	molecular_function	GMP synthase (glutamine-hydrolyzing) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.819
	SRR3591706	second leaf	0.399
	SRR3591707	mature leaf	0.484
	SRR3591708	Shoot apex	5.113
	SRR3591709	Stem	1.216
	SRR3591710	White floral bud	0.712
	SRR3591711	White flower	2.883
	SRR3591712	Green floral bud	2.391
	SRR3591713	Yellow flower	1.290
SRP173429	SRR8316895	Juvenile bud stage	2.003
	SRR8316896	Juvenile bud stage	3.987
	SRR8316897	Juvenile bud stage	0.797
	SRR8316894	Third green stage	0.813
	SRR8316900	Third green stage	2.006
	SRR8316901	Third green stage	1.548
	SRR8316898	Complete white stage	0.233
	SRR8316899	Complete white stage	2.247
	SRR8316903	Complete white stage	0.079
	SRR8316902	Silver flowering stage	0.701
	SRR8316904	Silver flowering stage	0.453
	SRR8316905	Silver flowering stage	0.203
	SRR8316906	Gold flowering stage	0.339
	SRR8316907	Gold flowering stage	1.535
	SRR8316908	Gold flowering stage	1.313
SRP132670	SRR6706286	Control	0.334
	SRR6706287	Light intensity 50%	1.018
	SRR6706288	Light intensity 20%	1.303
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.937
	CNS0095593	Slightly white alabastrum(diploid) 2	1.280
	CNS0095594	Slightly white alabastrum(diploid) 3	2.496
	CNS0095595	Whole white alabastrum(diploid) 2	1.731
	CNS0095596	Whole white alabastrum(diploid) 3	1.657
	CNS0095597	Whole white alabastrum(diploid) 4	0.760
	CNS0095598	Silvery flower (diploied) 1	0.500
	CNS0095599	Silvery flower (diploied) 2	0.795
	CNS0095600	Silvery flower (diploied) 3	1.164
	CNS0095601	Golden flower (diploid) 1	0.415
	CNS0095602	Golden flower (diploid) 2	0.679
	CNS0095603	Golden flower (diploid) 3	0.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.398
	CNS0095610	Silvery flower (tetraploid) 1	1.570
	CNS0095611	Silvery flower (tetraploid) 2	0.570
	CNS0095612	Silvery flower (tetraploid) 3	1.556
	CNS0095613	Golden flower (tetraploid) 1	0.621
	CNS0095614	Golden flower (tetraploid) 2	0.396
	CNS0095615	Golden flower (tetraploid) 3	0.168
CRA001975	CRR073297	Stem 1	2.655
	CRR073298	Stem 2	2.728
	CRR073299	Stem 3	3.779
	CRR073300	Leaf 1	1.896
	CRR073301	Leaf 2	2.126
	CRR073302	Leaf 3	2.236
	CRR073303	Juvenile bud 1	2.376
	CRR073304	Juvenile bud 2	0.576
	CRR073305	Juvenile bud 3	0.997
	CRR073306	Third green 1	0.341
	CRR073307	Third green 2	0.275
	CRR073308	Third green 3	0.616
	CRR073309	Second white 1	2.739
	CRR073310	Second white 2	1.925
	CRR073311	Second white 3	1.277
	CRR073312	Silver flowering 1	0.483
	CRR073313	Silver flowering 2	0.983
	CRR073314	Silver flowering 3	0.278
	CRR073315	Gold flowering 1	0.483
	CRR073316	Gold flowering 2	0.529
	CRR073317	Gold flowering 3	0.791
	CRR073318	Tawny withering 1	2.128
	CRR073319	Tawny withering 2	2.525
	CRR073320	Tawny withering 3	4.756