Gene detail

Detail information of GWHGAAZE006022

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040322.1	0	POX family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q38897\|BEL1_ARATH	3E-149	Homeobox protein BEL1 homolog
trEMBL	tr\|A0A061G6K4\|A0A061G6K4_THECC	0	POX family protein isoform 1 {ECO:0000313\|EMBL:EOY24827.1}
TAIR10	AT5G41410.1	1E-112	POX (plant homeobox) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18088333	18092903	-
GWHAAZE00000002	mRNA	18088333	18092903	-
GWHAAZE00000002	exon	18088333	18088974	-
GWHAAZE00000002	exon	18090363	18090423	-
GWHAAZE00000002	exon	18091215	18091597	-
GWHAAZE00000002	exon	18092076	18092903	-
GWHAAZE00000002	CDS	18092076	18092903	-
GWHAAZE00000002	CDS	18091215	18091597	-
GWHAAZE00000002	CDS	18090363	18090423	-
GWHAAZE00000002	CDS	18088333	18088974	-

Transcript Sequence
>GWHTAAZE006030 ATGGCCGGTTCTAGTGGCGCCGAAGATCATAAAATCACAAGGAATAACATGGTGTCTTCTACCGGCTACTGTTACTCGGACGTATCTTCGAGCCACCACCCCCACATGGTGAGCCAGTACGACTCGAACCCGGACATTTACAACTTGACCACAGGCATAGAGCTCATCGGCTTCCCTCATAAGAATCTTCTATCAACCATCCCAAACAACGCGATGTGGAAAGGGTTCACAAGTGCTAACCCTATATCAGATATTCCTCACGACTCTACAAGTTGGCACGAAAATAATAGACTTCTTGTTGATGATCCATCTATGAGGTGTGTATTTCCATGTGAACCAAATGAGAGGCCTAGCCAAGGCTTGTCGCTTTCCCTCAGTTCGACTAATCCTTCTACTATCGGATTACAGTCTTTCGAACTGAGGCATCAACAGGATGATACCAGATGTTTTGGTTCCAGTTCCAGAGATGGGTTTTTTGGTAAAACAACTGACGTTGTTCATCAGCAGCAGCAACAGAATCAGATGATTCAAGATCACCGGTTTCTAGGAAAAGGTGTAAGCACTGGTGTTGATCATCAGAATCAAGATGGGTTTATGATGAGGAACTCCAAGTACTTGGGTCCCGCTCAAGAGCTTTTAAACGAATTCTGTAACCTTGGAATCATACAGAATGATCATCTGCGTCAGAAGACAAATAAGCACCAAAAGATCAATCAATGGGAAGACGAGAGCGCGAGTAGCTCCTCGAAGCAGCCTTCTAATTTGCATTCCCTTGAACTCCTTGAGTTGCAAAAGAGAAAAGCAAAGCTACTTCAAATTTTGGAGGAGGTGGATAGAAGATACCAACACTATTGTGATCAAATGAAGGCGGTCGTATCCTCTTTCGAAGCAGTGGCAGGTAGCGGTGCGGCAACAGTATATTCGGCCTTGGCTTCGAAGGCCATGTCAAGGCATTTTAGGTGTTTAAGAGATGGAATTGTGGGTCAGATTAAGTCCACAAAGAAGGCTATGGGCGACAAGGATACATCTGTGCCAGGCAGCACTAGAGGTGAGACTCCGAGGCTTAGGCTTCTTGATCAAACCCTGAGGCAACAAAGGGCCTTTCAGCAAATGAGCATGATGGAGAGTCATCCGTGGAGGCCTCAACGCGGTTTACCTGAGAGATCTGTGTCTGTTCTTCGCGCTTGGCTATTCGAGCACTTCCTTCACCCGTATCCAAGCGATGTGGATAAGCACATTTTAGCCCGCCAAACAGGTCTCTCAAGAAGCCAGGTGTCAAACTGGTTCATCAATGCAAGAGTAAGGCTATGGAAACCAATGGTAGAAGAAATGTACATTGAAGAAACCAAAGACCAACAAGACAACATGTCATTCTCAGACGGAATTGAAGCCCTCAATGACAACAACCTCGCCCACCAGAATCCGAATCATCATCATTCTCGAACTGCAACCGAGGACCAAAAACCAACACAGGACCAACTCGTCCGCATAGATTCCGAATGCCTCTCCTCCATCATCAACCACCCCGATAAAAACACCAAAAACCCTAAAAACCATCAAAATAATATTAACCACCACCATGACTTTCACCACCAAAATTTCGGCTCGTTCGGAGCCGTCGAGTTGGATTTTTCGTCCTACAATCATCATTCGGCCGGTGGTGGAGCGGTGGAAAATTACGGCGGCAGTGGAGGTGGTGGCGGAGGGGTGTCGTTGACGTTGGGGCTGCAACAGCATGGAGTTGGAGGAGTGAACTTAGCATTCTCTCCAACTTCACAGAGTTCACTGTTTTATGGTGGTAGGGACCACATTGAAGATTGCCAGCAGGTTCAGTACTCTCTTTTGGATGGTGAAGGACAAAATTTGCCCTACAGGAACCTCATGGGTGCACAGTTGCTCCATGATCTCGCGTAA

Network for GWHGAAZE006022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.12	POX	200	326	5.60E-46
PF05920.12	Homeobox_KN	396	435	3.10E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.286
	SRR3591706	second leaf	39.944
	SRR3591707	mature leaf	150.007
	SRR3591708	Shoot apex	3.819
	SRR3591709	Stem	1.119
	SRR3591710	White floral bud	14.390
	SRR3591711	White flower	9.743
	SRR3591712	Green floral bud	17.302
	SRR3591713	Yellow flower	3.512
SRP173429	SRR8316895	Juvenile bud stage	5.304
	SRR8316896	Juvenile bud stage	4.071
	SRR8316897	Juvenile bud stage	3.000
	SRR8316894	Third green stage	3.575
	SRR8316900	Third green stage	12.710
	SRR8316901	Third green stage	8.449
	SRR8316898	Complete white stage	1.995
	SRR8316899	Complete white stage	13.694
	SRR8316903	Complete white stage	4.347
	SRR8316902	Silver flowering stage	1.133
	SRR8316904	Silver flowering stage	1.345
	SRR8316905	Silver flowering stage	0.618
	SRR8316906	Gold flowering stage	2.624
	SRR8316907	Gold flowering stage	1.866
	SRR8316908	Gold flowering stage	2.538
SRP132670	SRR6706286	Control	22.081
	SRR6706287	Light intensity 50%	21.428
	SRR6706288	Light intensity 20%	21.825
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.754
	CNS0095593	Slightly white alabastrum(diploid) 2	4.084
	CNS0095594	Slightly white alabastrum(diploid) 3	4.750
	CNS0095595	Whole white alabastrum(diploid) 2	5.055
	CNS0095596	Whole white alabastrum(diploid) 3	2.364
	CNS0095597	Whole white alabastrum(diploid) 4	6.207
	CNS0095598	Silvery flower (diploied) 1	16.761
	CNS0095599	Silvery flower (diploied) 2	9.612
	CNS0095600	Silvery flower (diploied) 3	6.848
	CNS0095601	Golden flower (diploid) 1	16.840
	CNS0095602	Golden flower (diploid) 2	11.472
	CNS0095603	Golden flower (diploid) 3	9.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.506
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.442
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.911
	CNS0095610	Silvery flower (tetraploid) 1	0.922
	CNS0095611	Silvery flower (tetraploid) 2	4.343
	CNS0095612	Silvery flower (tetraploid) 3	1.153
	CNS0095613	Golden flower (tetraploid) 1	0.777
	CNS0095614	Golden flower (tetraploid) 2	0.705
	CNS0095615	Golden flower (tetraploid) 3	0.564
CRA001975	CRR073297	Stem 1	3.797
	CRR073298	Stem 2	5.685
	CRR073299	Stem 3	4.157
	CRR073300	Leaf 1	5.254
	CRR073301	Leaf 2	4.877
	CRR073302	Leaf 3	4.932
	CRR073303	Juvenile bud 1	4.358
	CRR073304	Juvenile bud 2	3.678
	CRR073305	Juvenile bud 3	4.802
	CRR073306	Third green 1	2.583
	CRR073307	Third green 2	2.783
	CRR073308	Third green 3	3.494
	CRR073309	Second white 1	0.527
	CRR073310	Second white 2	1.505
	CRR073311	Second white 3	0.877
	CRR073312	Silver flowering 1	0.610
	CRR073313	Silver flowering 2	1.605
	CRR073314	Silver flowering 3	1.056
	CRR073315	Gold flowering 1	86.272
	CRR073316	Gold flowering 2	108.632
	CRR073317	Gold flowering 3	85.971
	CRR073318	Tawny withering 1	5.143
	CRR073319	Tawny withering 2	7.065
	CRR073320	Tawny withering 3	2.057