Gene detail

Detail information of GWHGAAZE006015

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009791163.1	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Nicotiana sylvestris]
Swissprot	tr\|P31531\|1A1C_SOYBN	1-aminocyclopropane-1-carboxylate synthase
trEMBL	tr\|Q9SC82\|Q9SC82_TOBAC	ACS2 {ECO:0000313\|EMBL:ABW97849.1}
TAIR10	AT4G11280.1	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17897513	17900751	+
GWHAAZE00000002	mRNA	17897513	17900751	+
GWHAAZE00000002	exon	17897513	17897680	+
GWHAAZE00000002	exon	17897946	17898077	+
GWHAAZE00000002	exon	17898202	17898362	+
GWHAAZE00000002	exon	17899761	17900751	+
GWHAAZE00000002	CDS	17897513	17897680	+
GWHAAZE00000002	CDS	17897946	17898077	+
GWHAAZE00000002	CDS	17898202	17898362	+
GWHAAZE00000002	CDS	17899761	17900751	+

Transcript Sequence
>GWHTAAZE006023 ATGGAGTTCATAATGAGGAACACGCAGCTACTGTCCAAGATAGCAACGAACGATGGGCACGGTGAAAAGTCGCCTTATTTCGACGGATGGAAGGCTTATGACAGCGATCCATTCAGCCCTAGAACCAATCCTTGCGGCGTAATTCAAATGGGTCTTGCAGAAAATCAGCTTTCCTTTGATTTAATCCAACAATGGGTCGTAAATCACCCAAGAGCCTCCATTTGCACTGCCGAAGGATCAAAAGACTTCAAGGAAATTGCAATTTTTCAAGATTATCATGGCTTACCAGAGTTCAGAAATGCCATTGCTAAGTTTATGGAGAAAGTGAGAGGAGACAGAGTGACATTCGACCCTGACCGGATTGTTATGGCCGGAGGAGCCACCGGAGCACATGAAATGTTGGCCTTTTGCTTGGCTGATCCCGGTGAAGCTTTCTTGGTGCCCACACCATATTACCCTGGATTTGATAGAGATTTAAGATGGAGAACAGGGGTGGAGCTAGTTCCAGTTATTTGTGACAGCTCCAACAATTTCAAGATTACACAAAGAGCCTTAGAAGCAGCCTACGACAAAGCCAAAGAATCCAACATCAAAGTAAAGGGCTTGCTCATAACCAACCCATCAAATCCTTTGGGCACAATCTTGGACAGAGAAACCTTAACAAATCTAGTAACCTTCACAGATGAAAAAAACATCCACCTTGTATGTGACGAAATATACGCAGCCACGGTCTTCAACAAGCCCTCTTTTGTCAGCATAGCCGAAATAATCGAACAAACAAACTGCAACCGTGACCTCATACACATCGTCTATAGCCTCTCCAAAGACATGGGATTCCCTGGTTTCAGGGTCGGGATTGTCTACTCGTACAACGATGCAGTTGTAAATTGTGCCCGTAAAATGTCGAGTTTCGGACTAGTTTCGACCCAAACACAACTTTTAATAGCATCGATGTTGTCTGACGAATCTTTCTTGGAGAAATTCATAGCCGAAAGTGGTGAGCGGTTAGCCACAAGGCACAGCGCGTTCACCCGTGGCCTCGAACAAGTAGGCATTGGGAGCCTAAAGAGCAATGCCGGGCTTTTCTTTTGGATGGACTTGCGTAGGCTTCTCAATGAACCCACGGTCGAAGCTGAAATGAAGCTTTGGCACATAATTATCAACGAGGTGAAGCTTAATGTTTCGCCGGGCTCTTCGTTTCATTGCTCCGAGCCCGGTTGGTTCAGGGTTTGCTTTGCAAATATGGATGATGAGACCATGATGGTTGCTTTGAGAAGAATCAGGAACTTTGTGCTTAAGGCCAAGGAACTTGAAGTGGCTTCTAAGAAGCATTGCCGCCGTAGTAACCTTCAACTCAGCTTATCGTTTAGGAGATTGGACGATATTATGATGACTCCGCGTATGTCTCCTCACTCGCCTATTGCTTCTTCGCCCCTCGTTCGAGCTACTTAG

Network for GWHGAAZE006015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	48	427	4.50E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20772	ACS1_2_6	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.407
	SRR3591706	second leaf	4.214
	SRR3591707	mature leaf	3.401
	SRR3591708	Shoot apex	5.234
	SRR3591709	Stem	7.801
	SRR3591710	White floral bud	39.251
	SRR3591711	White flower	26.177
	SRR3591712	Green floral bud	4.413
	SRR3591713	Yellow flower	13.626
SRP173429	SRR8316895	Juvenile bud stage	27.842
	SRR8316896	Juvenile bud stage	23.154
	SRR8316897	Juvenile bud stage	20.267
	SRR8316894	Third green stage	8.326
	SRR8316900	Third green stage	11.374
	SRR8316901	Third green stage	20.397
	SRR8316898	Complete white stage	7.023
	SRR8316899	Complete white stage	24.047
	SRR8316903	Complete white stage	9.982
	SRR8316902	Silver flowering stage	4.041
	SRR8316904	Silver flowering stage	10.992
	SRR8316905	Silver flowering stage	2.148
	SRR8316906	Gold flowering stage	8.596
	SRR8316907	Gold flowering stage	5.906
	SRR8316908	Gold flowering stage	16.999
SRP132670	SRR6706286	Control	12.197
	SRR6706287	Light intensity 50%	19.463
	SRR6706288	Light intensity 20%	11.042
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.071
	CNS0095593	Slightly white alabastrum(diploid) 2	31.338
	CNS0095594	Slightly white alabastrum(diploid) 3	18.998
	CNS0095595	Whole white alabastrum(diploid) 2	12.146
	CNS0095596	Whole white alabastrum(diploid) 3	1.650
	CNS0095597	Whole white alabastrum(diploid) 4	9.006
	CNS0095598	Silvery flower (diploied) 1	4.450
	CNS0095599	Silvery flower (diploied) 2	9.634
	CNS0095600	Silvery flower (diploied) 3	11.643
	CNS0095601	Golden flower (diploid) 1	16.309
	CNS0095602	Golden flower (diploid) 2	21.589
	CNS0095603	Golden flower (diploid) 3	20.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.388
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.011
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.494
	CNS0095610	Silvery flower (tetraploid) 1	5.245
	CNS0095611	Silvery flower (tetraploid) 2	3.651
	CNS0095612	Silvery flower (tetraploid) 3	7.945
	CNS0095613	Golden flower (tetraploid) 1	0.588
	CNS0095614	Golden flower (tetraploid) 2	7.767
	CNS0095615	Golden flower (tetraploid) 3	10.863
CRA001975	CRR073297	Stem 1	15.334
	CRR073298	Stem 2	19.166
	CRR073299	Stem 3	11.664
	CRR073300	Leaf 1	36.378
	CRR073301	Leaf 2	35.168
	CRR073302	Leaf 3	34.775
	CRR073303	Juvenile bud 1	28.671
	CRR073304	Juvenile bud 2	35.177
	CRR073305	Juvenile bud 3	54.357
	CRR073306	Third green 1	87.336
	CRR073307	Third green 2	50.384
	CRR073308	Third green 3	90.260
	CRR073309	Second white 1	1.692
	CRR073310	Second white 2	2.866
	CRR073311	Second white 3	1.040
	CRR073312	Silver flowering 1	4.313
	CRR073313	Silver flowering 2	3.498
	CRR073314	Silver flowering 3	3.704
	CRR073315	Gold flowering 1	32.955
	CRR073316	Gold flowering 2	83.715
	CRR073317	Gold flowering 3	105.081
	CRR073318	Tawny withering 1	19.921
	CRR073319	Tawny withering 2	73.663
	CRR073320	Tawny withering 3	4.583