Gene detail

Detail information of GWHGAAZE006012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081142.1	2.58781E-80	PREDICTED: probable WRKY transcription factor 29 [Sesamum indicum]
Swissprot	tr\|O04609\|WRK22_ARATH	2E-58	WRKY transcription factor 22
trEMBL	tr\|K7PDM8\|K7PDM8_CATRO	9E-79	WRKY22 {ECO:0000313\|EMBL:AFK88675.1}
TAIR10	AT4G01250.1	2E-34	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17849934	17851358	-
GWHAAZE00000002	mRNA	17849934	17851358	-
GWHAAZE00000002	exon	17849934	17850405	-
GWHAAZE00000002	exon	17850661	17850774	-
GWHAAZE00000002	exon	17851033	17851358	-
GWHAAZE00000002	CDS	17851033	17851358	-
GWHAAZE00000002	CDS	17850661	17850774	-
GWHAAZE00000002	CDS	17849934	17850405	-

Transcript Sequence
>GWHTAAZE006020 ATGGAAGATCATTGGAGTTTGCAAGCTGTCGTAGGTGGATGCAACAACGCAAATCACTTCGCCGACAACTCTTCAATGGATATTAACCTCATGGACGACTATGTTGTTGATGATACTACTCTTCTTTTGAGTTACCCTTGTATTTTTGAAAGCGCTAATGAATTAGAGCAACTCTACAAGCCTTTCTACCCTCTAATTCCCTCTCTCCCCATAGATTCCAAGGAATCGGTAGAGAAGCTTCCCTCCAGCTCCACTGCCAATCTTGTAACTACTGATCCTCCAAGTACCAGTACTACTGCTGCTCATGCATCTAAGTACAAAAGAAGGAAGAATCAGCAGAAAAGGGTGGTAATTCAAGTAACGGCGGAAGCTCTCTCTTCAGATGTGTGGGCTTGGCGCAAATATGGTCAAAAACCCATTAAAGGCTCTCCTTATCCAAGGAGCTATTATAGATGTAGCAGCTCAAAAGGATGCTTAGCAAGGAAGCAAGTGGAGCAGAGTTGCTCTGATCCAGGGATGTTCATCATAACCTACACAGCGGAACACAGCCACACTCAGCCCACTCGTCGGAATTCTCTCGCCGGCACCAACCGGAACAAGCCCAAAAGCCCCCTCTCCGCCGAACCCGACCTGCCAAAACCCAAAGATTCCACCTCTTCTCCGATGTCAACAGCTCTTCTCTCTCCAACAACCCCTTCAATTGAAGAAGAAGATGAAGAAATTATTCAACAACAAATTATCAAACAAGAGATCAAAGACGAAATTGGCGACATTGATAATGACTTTACCGTCGCTGATATGATTTTTGGCGACGATTTTTTTGCCGGATTGGAGGATTTGAGTGGATTCGGGTTGGATTCAGGCTTTTACAGCTGTTCTGCCCAGCAATTTCCGGCGACTTTTTGCAGCTGA

Network for GWHGAAZE006012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	128	184	1.20E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
K13425	WRKY22	MAPK signaling pathway - plant	map04016
K13425	WRKY22	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.108
	SRR3591706	second leaf	0.152
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.657
	SRR3591709	Stem	1.748
	SRR3591710	White floral bud	2.457
	SRR3591711	White flower	14.245
	SRR3591712	Green floral bud	1.595
	SRR3591713	Yellow flower	26.658
SRP173429	SRR8316895	Juvenile bud stage	8.835
	SRR8316896	Juvenile bud stage	6.453
	SRR8316897	Juvenile bud stage	5.921
	SRR8316894	Third green stage	1.077
	SRR8316900	Third green stage	0.730
	SRR8316901	Third green stage	3.594
	SRR8316898	Complete white stage	0.176
	SRR8316899	Complete white stage	5.273
	SRR8316903	Complete white stage	0.291
	SRR8316902	Silver flowering stage	1.021
	SRR8316904	Silver flowering stage	1.699
	SRR8316905	Silver flowering stage	1.097
	SRR8316906	Gold flowering stage	7.915
	SRR8316907	Gold flowering stage	8.453
	SRR8316908	Gold flowering stage	9.119
SRP132670	SRR6706286	Control	0.432
	SRR6706287	Light intensity 50%	1.337
	SRR6706288	Light intensity 20%	0.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.103
	CNS0095593	Slightly white alabastrum(diploid) 2	6.086
	CNS0095594	Slightly white alabastrum(diploid) 3	9.922
	CNS0095595	Whole white alabastrum(diploid) 2	5.978
	CNS0095596	Whole white alabastrum(diploid) 3	0.199
	CNS0095597	Whole white alabastrum(diploid) 4	1.911
	CNS0095598	Silvery flower (diploied) 1	20.245
	CNS0095599	Silvery flower (diploied) 2	12.548
	CNS0095600	Silvery flower (diploied) 3	10.039
	CNS0095601	Golden flower (diploid) 1	11.332
	CNS0095602	Golden flower (diploid) 2	22.049
	CNS0095603	Golden flower (diploid) 3	17.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.128
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.036
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.028
	CNS0095610	Silvery flower (tetraploid) 1	2.864
	CNS0095611	Silvery flower (tetraploid) 2	1.545
	CNS0095612	Silvery flower (tetraploid) 3	9.097
	CNS0095613	Golden flower (tetraploid) 1	14.558
	CNS0095614	Golden flower (tetraploid) 2	8.698
	CNS0095615	Golden flower (tetraploid) 3	19.925
CRA001975	CRR073297	Stem 1	0.514
	CRR073298	Stem 2	1.268
	CRR073299	Stem 3	0.680
	CRR073300	Leaf 1	2.224
	CRR073301	Leaf 2	2.963
	CRR073302	Leaf 3	0.258
	CRR073303	Juvenile bud 1	0.405
	CRR073304	Juvenile bud 2	2.029
	CRR073305	Juvenile bud 3	3.191
	CRR073306	Third green 1	3.225
	CRR073307	Third green 2	6.376
	CRR073308	Third green 3	4.173
	CRR073309	Second white 1	3.601
	CRR073310	Second white 2	8.166
	CRR073311	Second white 3	10.997
	CRR073312	Silver flowering 1	62.823
	CRR073313	Silver flowering 2	38.062
	CRR073314	Silver flowering 3	39.029
	CRR073315	Gold flowering 1	0.841
	CRR073316	Gold flowering 2	4.339
	CRR073317	Gold flowering 3	3.272
	CRR073318	Tawny withering 1	3.860
	CRR073319	Tawny withering 2	12.688
	CRR073320	Tawny withering 3	1.856