Detail information of GWHGAAZE006008


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010658435.17.41348E-65PREDICTED: E3 SUMO-protein ligase pli1 [Vitis vinifera]
trEMBLtr|F6HUN6|F6HUN6_VITVI3E-65Putative uncharacterized protein {ECO:0000313|EMBL:CCB58202.1}
TAIR10AT1G08910.10.003zinc ion binding;zinc ion binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1778351117785315+
GWHAAZE00000002mRNA1778351117785315+
GWHAAZE00000002exon1778351117784053+
GWHAAZE00000002exon1778455417785315+
GWHAAZE00000002CDS1778351117784053+
GWHAAZE00000002CDS1778455417785315+
Transcript Sequence

Network for GWHGAAZE006008

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04706PIAS1 Ubiquitin mediated proteolysis map04120
JAK-STAT signaling pathwaymap04630

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.794
SRR3591706second leaf17.012
SRR3591707mature leaf10.842
SRR3591708Shoot apex33.842
SRR3591709Stem17.635
SRR3591710White floral bud19.912
SRR3591711White flower20.994
SRR3591712Green floral bud21.363
SRR3591713Yellow flower14.036
SRP173429 SRR8316895Juvenile bud stage 16.906
SRR8316896Juvenile bud stage 21.406
SRR8316897Juvenile bud stage 10.004
SRR8316894Third green stage 8.839
SRR8316900Third green stage 19.870
SRR8316901Third green stage 19.402
SRR8316898Complete white stage 4.300
SRR8316899Complete white stage 23.272
SRR8316903Complete white stage 10.665
SRR8316902Silver flowering stage5.914
SRR8316904Silver flowering stage7.950
SRR8316905Silver flowering stage3.138
SRR8316906Gold flowering stage 11.616
SRR8316907Gold flowering stage 13.227
SRR8316908Gold flowering stage 11.516
SRP132670SRR6706286Control17.721
SRR6706287Light intensity 50%17.552
SRR6706288Light intensity 20%19.116
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.581
CNS0095593Slightly white alabastrum(diploid) 219.188
CNS0095594Slightly white alabastrum(diploid) 316.631
CNS0095595Whole white alabastrum(diploid) 217.537
CNS0095596Whole white alabastrum(diploid) 315.984
CNS0095597Whole white alabastrum(diploid) 417.508
CNS0095598Silvery flower (diploied) 122.868
CNS0095599Silvery flower (diploied) 216.677
CNS0095600Silvery flower (diploied) 318.144
CNS0095601Golden flower (diploid) 122.188
CNS0095602Golden flower (diploid) 220.938
CNS0095603Golden flower (diploid) 322.067
CNS0095604Slightly white alabastrum(tetraploid) 121.305
CNS0095605Slightly white alabastrum(tetraploid) 219.289
CNS0095606Slightly white alabastrum(tetraploid) 330.860
CNS0095607Whole white alabastrum(tetraploid) 117.007
CNS0095608Whole white alabastrum(tetraploid) 213.629
CNS0095609Whole white alabastrum(tetraploid) 319.439
CNS0095610Silvery flower (tetraploid) 116.493
CNS0095611Silvery flower (tetraploid) 217.886
CNS0095612Silvery flower (tetraploid) 317.994
CNS0095613Golden flower (tetraploid) 110.296
CNS0095614Golden flower (tetraploid) 216.536
CNS0095615Golden flower (tetraploid) 39.821
CRA001975CRR073297Stem 129.445
CRR073298Stem 227.248
CRR073299Stem 319.470
CRR073300Leaf 126.793
CRR073301Leaf 225.362
CRR073302Leaf 314.061
CRR073303Juvenile bud 114.290
CRR073304Juvenile bud 28.942
CRR073305Juvenile bud 318.907
CRR073306Third green 12.221
CRR073307Third green 22.425
CRR073308Third green 33.242
CRR073309Second white 13.618
CRR073310Second white 23.418
CRR073311Second white 33.142
CRR073312Silver flowering 12.462
CRR073313Silver flowering 22.595
CRR073314Silver flowering 32.561
CRR073315Gold flowering 16.816
CRR073316Gold flowering 213.055
CRR073317Gold flowering 311.649
CRR073318Tawny withering 116.622
CRR073319Tawny withering 219.077
CRR073320Tawny withering 317.515