Detail information of GWHGAAZE005982


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006476449.19.82505E-63PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic-like isoform X3 [Citrus sinensis]
Swissprottr|Q9FFR3|6PGD2_ARATH9E-616-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic
trEMBLtr|V4TH53|V4TH53_9ROSI4E-636-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}
TAIR10AT5G41670.23E-516-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1733476517335103+
GWHAAZE00000002mRNA1733476517335103+
GWHAAZE00000002exon1733476517335103+
GWHAAZE00000002CDS1733476517335103+
Transcript Sequence

Network for GWHGAAZE005982

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03446.16NAD_binding_2101106.20E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00033PGD, gnd, gntZ Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Pentose phosphate pathwaymap00030
Glutathione metabolismmap00480

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
GO:0050661molecular_functionNADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf138.717
SRR3591706second leaf102.643
SRR3591707mature leaf68.084
SRR3591708Shoot apex93.954
SRR3591709Stem84.334
SRR3591710White floral bud141.964
SRR3591711White flower169.959
SRR3591712Green floral bud131.182
SRR3591713Yellow flower146.254
SRP173429 SRR8316895Juvenile bud stage 81.159
SRR8316896Juvenile bud stage 114.341
SRR8316897Juvenile bud stage 45.458
SRR8316894Third green stage 43.538
SRR8316900Third green stage 136.136
SRR8316901Third green stage 128.465
SRR8316898Complete white stage 66.335
SRR8316899Complete white stage 128.956
SRR8316903Complete white stage 122.852
SRR8316902Silver flowering stage89.726
SRR8316904Silver flowering stage130.840
SRR8316905Silver flowering stage84.749
SRR8316906Gold flowering stage 248.175
SRR8316907Gold flowering stage 275.159
SRR8316908Gold flowering stage 279.911
SRP132670SRR6706286Control205.637
SRR6706287Light intensity 50%207.864
SRR6706288Light intensity 20%216.628
CNP0000432CNS0095592Slightly white alabastrum(diploid) 153.156
CNS0095593Slightly white alabastrum(diploid) 265.333
CNS0095594Slightly white alabastrum(diploid) 363.507
CNS0095595Whole white alabastrum(diploid) 275.517
CNS0095596Whole white alabastrum(diploid) 347.163
CNS0095597Whole white alabastrum(diploid) 474.192
CNS0095598Silvery flower (diploied) 181.359
CNS0095599Silvery flower (diploied) 270.909
CNS0095600Silvery flower (diploied) 3227.745
CNS0095601Golden flower (diploid) 154.909
CNS0095602Golden flower (diploid) 2190.506
CNS0095603Golden flower (diploid) 3184.273
CNS0095604Slightly white alabastrum(tetraploid) 185.525
CNS0095605Slightly white alabastrum(tetraploid) 267.465
CNS0095606Slightly white alabastrum(tetraploid) 3158.901
CNS0095607Whole white alabastrum(tetraploid) 168.146
CNS0095608Whole white alabastrum(tetraploid) 244.431
CNS0095609Whole white alabastrum(tetraploid) 3121.523
CNS0095610Silvery flower (tetraploid) 1202.692
CNS0095611Silvery flower (tetraploid) 2213.185
CNS0095612Silvery flower (tetraploid) 3213.222
CNS0095613Golden flower (tetraploid) 1100.717
CNS0095614Golden flower (tetraploid) 2175.175
CNS0095615Golden flower (tetraploid) 3211.110
CRA001975CRR073297Stem 1109.352
CRR073298Stem 2125.130
CRR073299Stem 3129.543
CRR073300Leaf 1151.336
CRR073301Leaf 2121.841
CRR073302Leaf 3125.044
CRR073303Juvenile bud 1116.117
CRR073304Juvenile bud 2158.937
CRR073305Juvenile bud 3187.169
CRR073306Third green 1226.755
CRR073307Third green 2155.115
CRR073308Third green 3183.438
CRR073309Second white 1247.936
CRR073310Second white 2154.136
CRR073311Second white 3163.735
CRR073312Silver flowering 1160.974
CRR073313Silver flowering 2230.937
CRR073314Silver flowering 3128.310
CRR073315Gold flowering 155.213
CRR073316Gold flowering 259.602
CRR073317Gold flowering 379.882
CRR073318Tawny withering 1117.038
CRR073319Tawny withering 253.001
CRR073320Tawny withering 3120.425