Gene detail

Detail information of GWHGAAZE005981

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002297990.2	hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	ABC transporter C family member 10
trEMBL	tr\|B9GL97\|B9GL97_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE82795.2}
TAIR10	AT3G59140.1	multidrug resistance-associated protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17316197	17322311	+
GWHAAZE00000002	mRNA	17316197	17322311	+
GWHAAZE00000002	exon	17316197	17317693	+
GWHAAZE00000002	exon	17317913	17318233	+
GWHAAZE00000002	exon	17318313	17318399	+
GWHAAZE00000002	exon	17318476	17319063	+
GWHAAZE00000002	exon	17319147	17319311	+
GWHAAZE00000002	exon	17319655	17319868	+
GWHAAZE00000002	exon	17320465	17320679	+
GWHAAZE00000002	exon	17320768	17321073	+
GWHAAZE00000002	exon	17321723	17321786	+
GWHAAZE00000002	exon	17321908	17322093	+
GWHAAZE00000002	exon	17322184	17322311	+
GWHAAZE00000002	CDS	17316197	17317693	+
GWHAAZE00000002	CDS	17317913	17318233	+
GWHAAZE00000002	CDS	17318313	17318399	+
GWHAAZE00000002	CDS	17318476	17319063	+
GWHAAZE00000002	CDS	17319147	17319311	+
GWHAAZE00000002	CDS	17319655	17319868	+
GWHAAZE00000002	CDS	17320465	17320679	+
GWHAAZE00000002	CDS	17320768	17321073	+
GWHAAZE00000002	CDS	17321723	17321786	+
GWHAAZE00000002	CDS	17321908	17322093	+
GWHAAZE00000002	CDS	17322184	17322311	+

Transcript Sequence
>GWHTAAZE005989 ATGGCTAAGGGTCTGTGGAACACCTTATGCGGGAACTCTAAAGCGGGGACTGAAGATGGTGGACTCTATTCCCCATTGCAAGGTGAACCACCAGAAGAAAGCGGCAAAATCAATCCAGATGATGAAAATGTGACCCCATTTGCTAATGCAGGACTTTTAAGTAAAATGTCATTTTGGTGGTTGAATCCATTAATGATGAAGGGTAAAGAGAAAGTTCTCGAGGACAAAGATATTCCAAAATTACGGCAGACAGATAGAGCAGATATGTGCTACTCCACATTTATGGAGCAACTGAGCAAACAGAAAGAGAAAGGGTCTGCTACTAACACCCCTTCTATTTTGTTAACACTATTCTTCTGGCAGTGGAAGGCTCTTTTAATAACCGGGTTCTTTGCATTGATCAAGGTACTTACTCTGGCAACTGGCCCTTTGCTTCTTAAAGAATTCATTAGGGTTGCTGAAGGCAATGAAACATTTAAATACGAGGGTTATGCCTTAGCTGGGGGGCTCTTATTGGCAAAATCCTTAGAATCACTATCAGAGCGTCAATGGTACTTTCGAACAAGACTAGTCGGGCTCCAAGTGAGATCAATGCTATCTGCAGTTATATATAAGAAGCAACTATGTCTATCCAGTGCTGCTAAGGCAACTCATTCTTCAGGCCAGATAATGAATTATGTCACAGTTGATGCATACAAAATTGGTGAATTTCCATACTGGTTTCATCAGATATGGACCACAAGCCTCCAAATATGCCTTGCACTGACTATTATTTACTATTCCTTAGGAGTGGCAACCTTTGCAGCTCTCTTTGTAATAATATTAACAGTTATAGGAAATTCTCCAACAGGAAAGTTGCAGCATAAATACTTATCAAAGCTAATGGTTGGGCAAGACAGGAGGCTGAAGGCTATTACAGAGGCACTTTCAAACATGAAAATTTTGAAGTTGTACGCATGGGAAACACATTTCAAGAAAGTCACAGAAGGTCTAAGGGAAGAAGAGTTTGGATGGTTATCGGCTGTTGTTTCACTAAAAGGTTGTTACCTAATTCTCTATTGGTCATCTTCAATAATTGTGTGTGCTGTTACTTTTTGGGCTTGCTATTTCCTAGGAGTTTCTCTTACTAGCAGTAATGTGTTCACATTTCTTGCAACATTACGTATGGTTCAAGAGCCTATTAGGTATATTCCTGAAGTTATAGGAGTGTTAATTGAAGCAAGGGTTTCGATGACTCGGATTGTAAAGTTTCTTGAGGCACCCGAATTGCAAAAAAGAAGTACTAAAGGAAAAAGCTTCGGGAACAAAGTTGAGAAGTCTATACAAGTAATTTCCACAAGAATTTCGTGGGATGCTGATTCTTCAAAGGCCACCCTAGTTGACATAAATTTGATGGTTAAGCCGGGTGAAAAGGTAGCCATTTGTGGAGAGGTTGGCTCTGGTAAATCAACCCTTTTAGCCACAATTCTTGGTGAGGTTCCAAACATCAATGGCACTGTTCAAGTTGATGGAAAGGTAGCTTATGTTTCTCAGACAGCATGGATCCAAACAGGGACAATACAATACAATATTTTGTTTGGGTCACCTATGAATGAAAGGAGATACCAAGAAGTACTTAACAAATGCTCCCTCCTGAAAGACCTTGAATTGCTTCCATATGGCGACTGCACTGTAATAGGAGAAAGAGGTGTTAATATCAGCGGTGGGCAAAAGCAACGGATTCAACTAGCACGCGCACTATATCAAAATGCAGATATATATCTATTGGATGATCCATTCAGCGCAGTTGATGCACATACAGCAACCAGTTTATTTAATGAATATGTAATGGGAGCTCTGTCAGGGAAGACAGTCTTACTAGTGACGCACCAAATCGACTTCCTTCCTACATTTGATAATGTTTTGTTAATGTCAGGAGGGAAAATCCTAAAAGCTGGCAAATATGATCTGTTGCTGGCTTCTAGTCCAGAGTTTCAAAGCATTGTGAATGCACACAATGACACTGCCGGTTCAGAGTTGCAAACAGCTAGTGGTTCTCAAGAAAGAGCTAAAACTCCAAAAGAAGAGATTCAAAAAATTTATACAGAGGAACAATTAGGGTCGTATCTAGGAGATCAGTTGATAAAAGAAGAAGAGAGAGAAGCAGGGGACACTGGTCTAAAGCCTTACAAACAGTATCTTAGTCAAAATAAGGGCTTCTTGTACCTTTCGCTGGCTGTAATAACCCATGCCATATATATAGTTGGTCAGTTTGTACAAAGTATTTGGATGGCTGCTGGAGTACAAAATTCTAGTATAAGTAGACTGAAACTGATCTTAATCTACATGATTATCGGGTGCATAATGTCTTTCTTTTTATTGCTCAGGTCTTATTTTATGGTTAAGTTAGGTCTTAGGACATCAAAAACCATTTTCTCTAAGCTGATGACTTCTCTTTTTCGAGCTCCAATGTCTTTTTATGACTCCACACCTCTGGGAAGAATACTCAGCCGGGTATCTTCCGATCTGAGTTACGTGGACCTTGAAATGGCATACAAATTGTCTCTTACCATAGGGTCAACCATCAACACATATTTTAGCTTTGGAGTACTAGCCATCCTTACCTGGCCTATCTTGTTTGTTATCGCACCCATGGTTTATATCGTTATACTCTTACAGAAATTCTACTTTGCTTCTACAAAAGAGTTGATGCGAATCGATGGCACAACTAAGTCTTCGGTGGCAAGCCATTTTGCTGAATCCATTGCTGGAGCAATGACCATCAGAGCTTTTGGAGAGGAAGATCGGTTCTTTTCTGAGAACTTGCACCTTATTGATGCAAATGTGAGTCCATGCTTCCACAATTTTTCGGCAAACGAATGGTTGATCCAGCGATTTATCGGAATGGCTCTGTCATATGGTCTTTCCTTGAATGTATTCCTCGTCTTTTCTGTCCAAAGCCAGTGCGTGATGTCAAATATGATTATTTCTGTTGAAAGGCTAGAACAGTACATGCATATTCCTGGTGAAGCCCCTGAAATAATAGACGGTAACCGTCCCTCGCTTAACTGGCCCAGTGTCGGTAGAGTGGAGATCCGTGATTTGAAGGTTAAATACCGGCCAAATGCCCCTCTAGTTCTTCAAGGGATTAGTTGCACATTTGAAGGAGGACACAAAATTGGAATTGTTGGCAGAACTGGTAGCGGGAAGACAACGCTGATAAGCGCCTTATTTCGCCTGGTAGAGCCTACAGAGGGAATGATCATCATAGATGACTTAAATATTTCTACAATTGGGCTCTACGACCTTAGATCACACTTCGGGGTCATTCCACAAGATCCAACACTTTTTGGCGGTTCAGTGAGATACAATCTAGACCCACTATCAGAACATCCTGATCGTGAAATATGGGAGGTTCTCGAAAAATGTCAGCTTCGCCAGGCCATTCAAGAGAAAGAAGAGGGATTGAACTCCTTGGGACGAGCCTTATTGAAGAAAAGGAAGATATTAGTTCTTGATGAAGCCACAGCATCAATAGACAATGCAACAGACTCTGTCATCCAGAGAACCATACGGACAGAGTTTGCAGAGTGCACTGTAATAACAGTGGCCCACAGAATACCATCAGTGATGGACTGCACAATGGTGCTTGGTATAAGCGACGGAAAATTAGTGGAGTATGACGAGCCAATGAAGCTACTGAATCGAGAAGGCTCATTATTTGGGCAGCTTGTTAAAGAATACTGGTCTCATTCTGGAAATGCTGGTAGGCAATTGGAGTCCAGGTATTGA

Network for GWHGAAZE005981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	125	391	2.50E-20
PF00005.28	ABC_tran	461	593	9.80E-23
PF00664.24	ABC_membrane	734	957	9.70E-31
PF00005.28	ABC_tran	1040	1170	5.90E-21

Protein Sequence

>GWHPAAZE005985
MAKGLWNTLCGNSKAGTEDGGLYSPLQGEPPEESGKINPDDENVTPFANAGLLSKMSFWWLNPLMMKGKEKVLEDKDIPKLRQTDRADMCYSTFMEQLSKQKEKGSATNTPSILLTLFFWQWKALLITGFFALIKVLTLATGPLLLKEFIRVAEGNETFKYEGYALAGGLLLAKSLESLSERQWYFRTRLVGLQVRSMLSAVIYKKQLCLSSAAKATHSSGQIMNYVTVDAYKIGEFPYWFHQIWTTSLQICLALTIIYYSLGVATFAALFVIILTVIGNSPTGKLQHKYLSKLMVGQDRRLKAITEALSNMKILKLYAWETHFKKVTEGLREEEFGWLSAVVSLKGCYLILYWSSSIIVCAVTFWACYFLGVSLTSSNVFTFLATLRMVQEPIRYIPEVIGVLIEARVSMTRIVKFLEAPELQKRSTKGKSFGNKVEKSIQVISTRISWDADSSKATLVDINLMVKPGEKVAICGEVGSGKSTLLATILGEVPNINGTVQVDGKVAYVSQTAWIQTGTIQYNILFGSPMNERRYQEVLNKCSLLKDLELLPYGDCTVIGERGVNISGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNEYVMGALSGKTVLLVTHQIDFLPTFDNVLLMSGGKILKAGKYDLLLASSPEFQSIVNAHNDTAGSELQTASGSQERAKTPKEEIQKIYTEEQLGSYLGDQLIKEEEREAGDTGLKPYKQYLSQNKGFLYLSLAVITHAIYIVGQFVQSIWMAAGVQNSSISRLKLILIYMIIGCIMSFFLLLRSYFMVKLGLRTSKTIFSKLMTSLFRAPMSFYDSTPLGRILSRVSSDLSYVDLEMAYKLSLTIGSTINTYFSFGVLAILTWPILFVIAPMVYIVILLQKFYFASTKELMRIDGTTKSSVASHFAESIAGAMTIRAFGEEDRFFSENLHLIDANVSPCFHNFSANEWLIQRFIGMALSYGLSLNVFLVFSVQSQCVMSNMIISVERLEQYMHIPGEAPEIIDGNRPSLNWPSVGRVEIRDLKVKYRPNAPLVLQGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPTEGMIIIDDLNISTIGLYDLRSHFGVIPQDPTLFGGSVRYNLDPLSEHPDREIWEVLEKCQLRQAIQEKEEGLNSLGRALLKKRKILVLDEATASIDNATDSVIQRTIRTEFAECTVITVAHRIPSVMDCTMVLGISDGKLVEYDEPMKLLNREGSLFGQLVKEYWSHSGNAGRQLESRY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.320
	SRR3591706	second leaf	1.558
	SRR3591707	mature leaf	1.068
	SRR3591708	Shoot apex	2.249
	SRR3591709	Stem	1.357
	SRR3591710	White floral bud	3.679
	SRR3591711	White flower	1.426
	SRR3591712	Green floral bud	21.413
	SRR3591713	Yellow flower	0.388
SRP173429	SRR8316895	Juvenile bud stage	4.918
	SRR8316896	Juvenile bud stage	19.847
	SRR8316897	Juvenile bud stage	11.947
	SRR8316894	Third green stage	10.221
	SRR8316900	Third green stage	34.277
	SRR8316901	Third green stage	19.939
	SRR8316898	Complete white stage	0.308
	SRR8316899	Complete white stage	0.884
	SRR8316903	Complete white stage	0.452
	SRR8316902	Silver flowering stage	0.258
	SRR8316904	Silver flowering stage	0.455
	SRR8316905	Silver flowering stage	0.233
	SRR8316906	Gold flowering stage	0.812
	SRR8316907	Gold flowering stage	0.691
	SRR8316908	Gold flowering stage	0.354
SRP132670	SRR6706286	Control	41.269
	SRR6706287	Light intensity 50%	44.693
	SRR6706288	Light intensity 20%	47.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.244
	CNS0095593	Slightly white alabastrum(diploid) 2	4.705
	CNS0095594	Slightly white alabastrum(diploid) 3	13.729
	CNS0095595	Whole white alabastrum(diploid) 2	5.492
	CNS0095596	Whole white alabastrum(diploid) 3	7.675
	CNS0095597	Whole white alabastrum(diploid) 4	13.672
	CNS0095598	Silvery flower (diploied) 1	0.897
	CNS0095599	Silvery flower (diploied) 2	0.850
	CNS0095600	Silvery flower (diploied) 3	0.950
	CNS0095601	Golden flower (diploid) 1	0.769
	CNS0095602	Golden flower (diploid) 2	0.697
	CNS0095603	Golden flower (diploid) 3	0.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.701
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.503
	CNS0095610	Silvery flower (tetraploid) 1	0.838
	CNS0095611	Silvery flower (tetraploid) 2	0.864
	CNS0095612	Silvery flower (tetraploid) 3	1.136
	CNS0095613	Golden flower (tetraploid) 1	0.442
	CNS0095614	Golden flower (tetraploid) 2	0.667
	CNS0095615	Golden flower (tetraploid) 3	0.831
CRA001975	CRR073297	Stem 1	3.100
	CRR073298	Stem 2	6.107
	CRR073299	Stem 3	2.809
	CRR073300	Leaf 1	4.023
	CRR073301	Leaf 2	3.080
	CRR073302	Leaf 3	4.567
	CRR073303	Juvenile bud 1	0.384
	CRR073304	Juvenile bud 2	0.748
	CRR073305	Juvenile bud 3	0.352
	CRR073306	Third green 1	0.155
	CRR073307	Third green 2	0.228
	CRR073308	Third green 3	0.353
	CRR073309	Second white 1	0.370
	CRR073310	Second white 2	0.329
	CRR073311	Second white 3	0.252
	CRR073312	Silver flowering 1	0.407
	CRR073313	Silver flowering 2	0.161
	CRR073314	Silver flowering 3	0.249
	CRR073315	Gold flowering 1	0.515
	CRR073316	Gold flowering 2	0.473
	CRR073317	Gold flowering 3	0.257
	CRR073318	Tawny withering 1	0.357
	CRR073319	Tawny withering 2	0.513
	CRR073320	Tawny withering 3	0.483