Detail information of GWHGAAZE005976


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010097872.13.49902E-55Ubiquitin-conjugating enzyme E2 10 [Morus notabilis]
Swissprottr|P35133|UBC10_ARATH6E-56Ubiquitin-conjugating enzyme E2 10
trEMBLtr|W9RDV8|W9RDV8_9ROSA1E-55Ubiquitin-conjugating enzyme E2 10 {ECO:0000313|EMBL:EXB72469.1}
TAIR10AT5G53300.42E-44ubiquitin-conjugating enzyme 10

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1722836617229693-
GWHAAZE00000002mRNA1722836617229693-
GWHAAZE00000002exon1722955617229693-
GWHAAZE00000002exon1722836617228509-
GWHAAZE00000002CDS1722955617229693-
GWHAAZE00000002CDS1722836617228509-
Transcript Sequence

Network for GWHGAAZE005976

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con11864.80E-28
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf257.058
SRR3591706second leaf121.572
SRR3591707mature leaf164.156
SRR3591708Shoot apex187.656
SRR3591709Stem339.103
SRR3591710White floral bud189.549
SRR3591711White flower234.559
SRR3591712Green floral bud174.760
SRR3591713Yellow flower221.445
SRP173429 SRR8316895Juvenile bud stage 97.568
SRR8316896Juvenile bud stage 146.183
SRR8316897Juvenile bud stage 67.202
SRR8316894Third green stage 58.875
SRR8316900Third green stage 232.034
SRR8316901Third green stage 206.695
SRR8316898Complete white stage 126.168
SRR8316899Complete white stage 308.383
SRR8316903Complete white stage 181.101
SRR8316902Silver flowering stage140.825
SRR8316904Silver flowering stage163.312
SRR8316905Silver flowering stage84.445
SRR8316906Gold flowering stage 310.337
SRR8316907Gold flowering stage 318.536
SRR8316908Gold flowering stage 314.668
SRP132670SRR6706286Control249.270
SRR6706287Light intensity 50%224.537
SRR6706288Light intensity 20%223.992
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1210.944
CNS0095593Slightly white alabastrum(diploid) 2213.490
CNS0095594Slightly white alabastrum(diploid) 3197.235
CNS0095595Whole white alabastrum(diploid) 2207.824
CNS0095596Whole white alabastrum(diploid) 3180.173
CNS0095597Whole white alabastrum(diploid) 4173.075
CNS0095598Silvery flower (diploied) 1199.762
CNS0095599Silvery flower (diploied) 2216.143
CNS0095600Silvery flower (diploied) 3256.137
CNS0095601Golden flower (diploid) 1233.767
CNS0095602Golden flower (diploid) 2243.226
CNS0095603Golden flower (diploid) 3241.825
CNS0095604Slightly white alabastrum(tetraploid) 1168.839
CNS0095605Slightly white alabastrum(tetraploid) 2173.108
CNS0095606Slightly white alabastrum(tetraploid) 3205.980
CNS0095607Whole white alabastrum(tetraploid) 1142.658
CNS0095608Whole white alabastrum(tetraploid) 2147.738
CNS0095609Whole white alabastrum(tetraploid) 3158.073
CNS0095610Silvery flower (tetraploid) 1279.070
CNS0095611Silvery flower (tetraploid) 2273.543
CNS0095612Silvery flower (tetraploid) 3259.103
CNS0095613Golden flower (tetraploid) 1232.014
CNS0095614Golden flower (tetraploid) 2240.412
CNS0095615Golden flower (tetraploid) 3276.844
CRA001975CRR073297Stem 197.759
CRR073298Stem 290.005
CRR073299Stem 3100.893
CRR073300Leaf 1106.595
CRR073301Leaf 2116.291
CRR073302Leaf 3128.248
CRR073303Juvenile bud 1149.004
CRR073304Juvenile bud 2140.276
CRR073305Juvenile bud 3145.311
CRR073306Third green 1116.513
CRR073307Third green 2159.675
CRR073308Third green 3118.877
CRR073309Second white 1218.078
CRR073310Second white 2140.370
CRR073311Second white 3113.966
CRR073312Silver flowering 1137.309
CRR073313Silver flowering 2162.780
CRR073314Silver flowering 3117.249
CRR073315Gold flowering 1193.850
CRR073316Gold flowering 2182.106
CRR073317Gold flowering 3183.331
CRR073318Tawny withering 1234.148
CRR073319Tawny withering 2278.420
CRR073320Tawny withering 3206.291