Gene detail

Detail information of GWHGAAZE005967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002304549.1	1.2305E-120	WRKY transcription factor 53 family protein [Populus trichocarpa]
Swissprot	tr\|Q8H0Y8\|WRK41_ARATH	6E-66	Probable WRKY transcription factor 41
trEMBL	tr\|B9GXG9\|B9GXG9_POPTR	5E-121	WRKY transcription factor 53 family protein {ECO:0000313\|EMBL:EEE79528.1}
TAIR10	AT4G11070.1	7E-53	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17042660	17044447	+
GWHAAZE00000002	mRNA	17042660	17044447	+
GWHAAZE00000002	exon	17042660	17042985	+
GWHAAZE00000002	exon	17043096	17043224	+
GWHAAZE00000002	exon	17043925	17044447	+
GWHAAZE00000002	CDS	17042660	17042985	+
GWHAAZE00000002	CDS	17043096	17043224	+
GWHAAZE00000002	CDS	17043925	17044447	+

Transcript Sequence
>GWHTAAZE005975 ATGGATACTATTTGCAATTGGGAACACAAGGCACTAGTGATTGAGCTGAACCAGGGGATGGAGCTAACCAAGCAGCTAAGGCTTCACCTGGGCTCAGCTTCTTCTTATGAAACCCAAGAAATGTTACTACAGGGAATTTTATCTTCCTATGACAAGGCTATGTTGATTCTCAACTTGAGCAGCTCGACTTCCCAGCAGCCACAGCTTGTGGGAACTGCAGCCGGCTTTCCGGAGTCCTCTGTTTCAGCCAACGCCAGTCCCCGGAGCACAGAATTCGACAAGGGGTTTAAGGATCAACAGGAACAGAAAGACGTATCAAAGAAGAGAAAGTTATTGCCAGCATGGACAGAACAAGTGAGGGTTTGCTCTGAGAATGGGATGGAGGGACCAAATGATGATGGGTATAGTTGGAGGAAATATGGGCAGAAAGACATTTTAGGTGCTACATATCCCAGAAGCTACTATAGATGCACATACCGCAACGTTCAAAATTGTTGGGCTACAAAGCAAGTTCAAAGATTAGATGACGATCCCACAGTATTTGAAATCACATACAGAGGAGCACACACCTGCAGCCAGGCTAGCCACCTGGTGCCACCGCCAGCATCGCCAGAAAAACAAGAAGCAAAGCACAACCACCACCACCACCAGCAAACAAACGAGACACTTTTCAACTTCAGAGCAAACCTAAGAGTCAATACAGAGGAATTTAACTACAAGGAAACGGAATCCCCATTCTCTTTCCCTTCTGCATCATTTGGTGAAAACCAATTCAACCCATTTACGACGCTTACCAGTGATGATCTGCTCGGGGGTTACTCGCCGGCATTTGTTTCTCCAGCCACATCTGGGTCAAACTATTTCTCGGCCACAAATTCTCCAGTTGTGAACTTGGATTTCTCAATTGATCAGGTGGATCTTGATCAGAATTTTCCATTTGACACCCCAGGATTTTTTAATTCCTCCAAAACATTGTAG

Network for GWHGAAZE005967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	132	191	1.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.434
	SRR3591706	second leaf	5.407
	SRR3591707	mature leaf	6.283
	SRR3591708	Shoot apex	13.578
	SRR3591709	Stem	132.845
	SRR3591710	White floral bud	22.794
	SRR3591711	White flower	49.365
	SRR3591712	Green floral bud	10.063
	SRR3591713	Yellow flower	26.433
SRP173429	SRR8316895	Juvenile bud stage	65.078
	SRR8316896	Juvenile bud stage	18.711
	SRR8316897	Juvenile bud stage	50.614
	SRR8316894	Third green stage	13.868
	SRR8316900	Third green stage	7.292
	SRR8316901	Third green stage	12.151
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	31.213
	SRR8316903	Complete white stage	2.628
	SRR8316902	Silver flowering stage	7.127
	SRR8316904	Silver flowering stage	6.586
	SRR8316905	Silver flowering stage	3.835
	SRR8316906	Gold flowering stage	26.366
	SRR8316907	Gold flowering stage	17.476
	SRR8316908	Gold flowering stage	43.160
SRP132670	SRR6706286	Control	11.666
	SRR6706287	Light intensity 50%	19.355
	SRR6706288	Light intensity 20%	7.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.825
	CNS0095593	Slightly white alabastrum(diploid) 2	46.889
	CNS0095594	Slightly white alabastrum(diploid) 3	51.530
	CNS0095595	Whole white alabastrum(diploid) 2	34.152
	CNS0095596	Whole white alabastrum(diploid) 3	3.682
	CNS0095597	Whole white alabastrum(diploid) 4	26.365
	CNS0095598	Silvery flower (diploied) 1	145.370
	CNS0095599	Silvery flower (diploied) 2	104.466
	CNS0095600	Silvery flower (diploied) 3	43.760
	CNS0095601	Golden flower (diploid) 1	146.212
	CNS0095602	Golden flower (diploid) 2	93.819
	CNS0095603	Golden flower (diploid) 3	97.952
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.727
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.589
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.601
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.077
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.643
	CNS0095610	Silvery flower (tetraploid) 1	4.382
	CNS0095611	Silvery flower (tetraploid) 2	1.393
	CNS0095612	Silvery flower (tetraploid) 3	3.347
	CNS0095613	Golden flower (tetraploid) 1	4.320
	CNS0095614	Golden flower (tetraploid) 2	6.787
	CNS0095615	Golden flower (tetraploid) 3	1.641
CRA001975	CRR073297	Stem 1	16.471
	CRR073298	Stem 2	7.625
	CRR073299	Stem 3	7.146
	CRR073300	Leaf 1	7.039
	CRR073301	Leaf 2	15.042
	CRR073302	Leaf 3	2.376
	CRR073303	Juvenile bud 1	3.563
	CRR073304	Juvenile bud 2	2.294
	CRR073305	Juvenile bud 3	8.817
	CRR073306	Third green 1	0.924
	CRR073307	Third green 2	0.945
	CRR073308	Third green 3	1.622
	CRR073309	Second white 1	1.048
	CRR073310	Second white 2	2.457
	CRR073311	Second white 3	3.099
	CRR073312	Silver flowering 1	16.509
	CRR073313	Silver flowering 2	13.065
	CRR073314	Silver flowering 3	6.943
	CRR073315	Gold flowering 1	12.338
	CRR073316	Gold flowering 2	36.293
	CRR073317	Gold flowering 3	38.963
	CRR073318	Tawny withering 1	28.654
	CRR073319	Tawny withering 2	129.330
	CRR073320	Tawny withering 3	28.736