Gene detail

Detail information of GWHGAAZE005960

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010266498.1	PREDICTED: endoglucanase 19 [Nelumbo nucifera]
Swissprot	tr\|Q42059\|GUN6_ARATH	Endoglucanase 6 (Precursor)
trEMBL	tr\|B9GL66\|B9GL66_POPTR	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G64390.1	glycosyl hydrolase 9C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16855866	16861326	-
GWHAAZE00000002	mRNA	16855866	16861326	-
GWHAAZE00000002	exon	16860904	16861326	-
GWHAAZE00000002	exon	16860613	16860825	-
GWHAAZE00000002	exon	16859962	16860162	-
GWHAAZE00000002	exon	16858319	16858408	-
GWHAAZE00000002	exon	16858001	16858165	-
GWHAAZE00000002	exon	16857176	16857460	-
GWHAAZE00000002	exon	16856513	16856861	-
GWHAAZE00000002	exon	16856324	16856398	-
GWHAAZE00000002	exon	16855866	16856164	-
GWHAAZE00000002	five_prime_UTR	16861123	16861326	-
GWHAAZE00000002	CDS	16860904	16861122	-
GWHAAZE00000002	CDS	16860613	16860825	-
GWHAAZE00000002	CDS	16859962	16860162	-
GWHAAZE00000002	CDS	16858319	16858408	-
GWHAAZE00000002	CDS	16858001	16858165	-
GWHAAZE00000002	CDS	16857176	16857460	-
GWHAAZE00000002	CDS	16856513	16856861	-
GWHAAZE00000002	CDS	16856324	16856398	-
GWHAAZE00000002	CDS	16855866	16856164	-

Transcript Sequence
>GWHTAAZE005968 TCCCTTCTCTCTCTCTCTCTGAGTATTACTCGGTCACTCGATCTGTTTCAAATTCTTGGTTTAGGGTAATGAACCGAACCAACATTGTCATTTCGTAATTAATAATAGCCATCTCTGTTACAACAACATATCTGTACCCGCTCATTTACTCACTAACGATAAGTTTCAATTCTTGATTCTTCTTGTGTTAATTGTTGGAATTTAATGAAGAGTTGTGCGAGAGACTATTCTATGGCTCCTCTGTTTCTTGTTCTTACCGGCTTCCTTCTTGTCCCATTGGCCTCTTGTGCTGGGCACGACTATGGTCAAGCCCTAACCAAAAGCATACTCTTCTTCGAAGCACAGCGATCTGGTCCACTTCCCTCTTCCCAAAGAGTCCAATGGAGGGGTCACTCTGGTCTTTATGACGGCAAGGCTAATGGGGTGGATTTGGTAGGAGGGTATTATGATGCAGGGGATAATGTGAAGTTTGGGTTACCAATGGCGTTCACTGTGACAATGATGTCTTGGAGCATATTGGAGTACGGTAAGCAGATGGGTGCAACTGGAGAACTGGGTCACGCCATGGATGCTGTTAAGTGGGGCACTGACTATCTCATTAAAGCTCATCCAGAACCCAATGTCCTCTATGGAGAGGTGGGCGATGGGAACACAGACCATTACTGCTGGCAAAGGCCGGAGGACATGACAACTTCACGCCAAGCTTACAAGATAGATCCCAGCAAGCCTGGTTCCGACCTTGCCGGCGAGACCGCCGCCGCTATGGCCGCCGCCTCCGTCGTCTTTCGGGCCTCAAATCCCTCCTATTCCCATACACTCCTCAACCATGCCTACCAGCTATTCGATTTTGCGGACAAATACAGGGGCAAATATGACAGCAGCATCTCAGTAGCTCAGAAGTACTACCGTTCTGTTAGCGGATACGACGATGAATTGCTATGGGCTGCTGCGTGGTTGTACAAGGCATCAAACAATGAGTACTACTTGAACTACCTAGGTAACAACGGTGATGCCCTTGGTGGCACTGGCTGGGCCATGACTGAGTTTGGCTGGGATGTCAAGTATGCCGGCGTTCAGACCCTTGTCGCCAAGTTTCTAATGCAAGGGAAAGGTGGTCACTACGCACCAGTGTTTGAAAAGTACCAAGAGAAGGCAGAGTTCTTCATGTGTTCCTGCCTCGGTAAAAGCACCCACAATGTTCAAAAAACTCCGGGTGGCCTCATTTTCCGACAGAGATGGAACAACTTACAGTTTGTTACAAGCGCCTCCTTCCTCCTCACTACCTACTCCGACTACCTCTCCTCTGCTGGCAAAAACCTCAAATGTGCTTCCGGCACCGTCTCTCCCTCTGAGCTACTCTCATTCGCTAAATCCCAGGTGGACTACATTCTTGGAGACAACCCGAGAGCAACGAGTTACATGGTTGGGTACGGGAGCAACTACCCGAAACAAGTTCACCACCGAGCTTCCTCAATCGTCTCTATTAAGGAGGACCCATCATTCGTTACATGCCGGGGGGGCTATGCCACTTGGTTCAGCAGGAAGGCAAGTGACCCGAATCTACTTACTGGTGCTATCGTTGGTGGACCTGATGCCTACGATAACTTTGCTGATGAACGTGACAACTACGAGCAAACAGAACCTGCTACCTACAACAATGCTCCTCTTCTTGGCATATTGGCCAGGCTTAGTGGAGGTCATAGTGGGTATAACCAGCTCTTGCCAGTACAACTTCCTGCTCCTAAACCCGTTGTTACCAAGCCAAAGCCATCTCCACAACATAAAGCAACTCCATCTCCAGCTTCAACTTCATCACAAATTTCAATTGAGCAAAAGAAAACAAGTTCATGGGTTTCCAATGGAAGAACTTACTACAGATACTCAACTGTAGTGACCAACAAATCAGGAAAGACGCTAAAGAACCTCAAGCTTTCAGTATCCAACCTCTACGGTCCTCTCTGGGGTCTCAAAAAGTACGGCAATTCTTACACACTTCCAGCGTGGATCAAATATTTGCCAGCAGGTAAAAGCATCGAGTTTGTGTATATCCACTCGGCTTCTCCAGCCGACGTCTCGGTCTCAAGCTACACTTTGGACTAA

Network for GWHGAAZE005960

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	33	492	6.80E-150
PF09478.11	CBM49	539	616	1.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	175.762
	SRR3591706	second leaf	194.789
	SRR3591707	mature leaf	27.446
	SRR3591708	Shoot apex	76.509
	SRR3591709	Stem	17.853
	SRR3591710	White floral bud	147.550
	SRR3591711	White flower	18.075
	SRR3591712	Green floral bud	392.507
	SRR3591713	Yellow flower	6.025
SRP173429	SRR8316895	Juvenile bud stage	13.023
	SRR8316896	Juvenile bud stage	28.208
	SRR8316897	Juvenile bud stage	6.243
	SRR8316894	Third green stage	52.728
	SRR8316900	Third green stage	373.108
	SRR8316901	Third green stage	285.474
	SRR8316898	Complete white stage	56.756
	SRR8316899	Complete white stage	154.365
	SRR8316903	Complete white stage	96.221
	SRR8316902	Silver flowering stage	3.802
	SRR8316904	Silver flowering stage	5.135
	SRR8316905	Silver flowering stage	1.733
	SRR8316906	Gold flowering stage	4.106
	SRR8316907	Gold flowering stage	3.882
	SRR8316908	Gold flowering stage	10.905
SRP132670	SRR6706286	Control	156.088
	SRR6706287	Light intensity 50%	189.985
	SRR6706288	Light intensity 20%	194.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.175
	CNS0095593	Slightly white alabastrum(diploid) 2	66.526
	CNS0095594	Slightly white alabastrum(diploid) 3	25.451
	CNS0095595	Whole white alabastrum(diploid) 2	65.411
	CNS0095596	Whole white alabastrum(diploid) 3	64.343
	CNS0095597	Whole white alabastrum(diploid) 4	42.463
	CNS0095598	Silvery flower (diploied) 1	7.355
	CNS0095599	Silvery flower (diploied) 2	5.114
	CNS0095600	Silvery flower (diploied) 3	4.945
	CNS0095601	Golden flower (diploid) 1	3.877
	CNS0095602	Golden flower (diploid) 2	5.018
	CNS0095603	Golden flower (diploid) 3	4.634
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	232.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.260
	CNS0095609	Whole white alabastrum(tetraploid) 3	201.628
	CNS0095610	Silvery flower (tetraploid) 1	8.617
	CNS0095611	Silvery flower (tetraploid) 2	7.584
	CNS0095612	Silvery flower (tetraploid) 3	24.524
	CNS0095613	Golden flower (tetraploid) 1	2.850
	CNS0095614	Golden flower (tetraploid) 2	12.935
	CNS0095615	Golden flower (tetraploid) 3	10.194
CRA001975	CRR073297	Stem 1	177.967
	CRR073298	Stem 2	305.120
	CRR073299	Stem 3	230.071
	CRR073300	Leaf 1	882.755
	CRR073301	Leaf 2	534.623
	CRR073302	Leaf 3	531.971
	CRR073303	Juvenile bud 1	325.518
	CRR073304	Juvenile bud 2	369.995
	CRR073305	Juvenile bud 3	265.437
	CRR073306	Third green 1	29.762
	CRR073307	Third green 2	23.943
	CRR073308	Third green 3	42.482
	CRR073309	Second white 1	2.653
	CRR073310	Second white 2	3.259
	CRR073311	Second white 3	1.612
	CRR073312	Silver flowering 1	6.876
	CRR073313	Silver flowering 2	12.720
	CRR073314	Silver flowering 3	10.644
	CRR073315	Gold flowering 1	4.308
	CRR073316	Gold flowering 2	4.347
	CRR073317	Gold flowering 3	13.683
	CRR073318	Tawny withering 1	15.199
	CRR073319	Tawny withering 2	13.264
	CRR073320	Tawny withering 3	3.945