Gene detail

Detail information of GWHGAAZE005959

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP22158.1	4.54205E-91	hypothetical protein JCGZ_25989 [Jatropha curcas]
Swissprot	tr\|Q5SN75\|P2C08_ORYSJ	5E-77	Probable protein phosphatase 2C 8
trEMBL	tr\|A0A067JH80\|A0A067JH80_JATCU	2E-91	Uncharacterized protein {ECO:0000313\|EMBL:KDP22158.1}
TAIR10	AT1G07430.1	1E-46	highly ABA-induced PP2C gene 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16851032	16854419	+
GWHAAZE00000002	mRNA	16851032	16854419	+
GWHAAZE00000002	exon	16851032	16851313	+
GWHAAZE00000002	exon	16851387	16851629	+
GWHAAZE00000002	exon	16853586	16853691	+
GWHAAZE00000002	exon	16854136	16854419	+
GWHAAZE00000002	CDS	16851032	16851313	+
GWHAAZE00000002	CDS	16851387	16851629	+
GWHAAZE00000002	CDS	16853586	16853691	+
GWHAAZE00000002	CDS	16854136	16854419	+

Transcript Sequence
>GWHTAAZE005967 ATGAAGCCCCATAGCCTCCACGAGAGCTCCACCTCGGCCGAGGTTGAACCGACGTTGGCCGAAGACTGTTTGAAGAAGACGTTGCCTTCGAGCGAGATTGAGGCTATGAATGACATCTTGCTGTCAGGTTCAACTCCGTTCCAGTCCTGCGGAGAGGAAGAGGAGGAAGATCTGAGTAAGTTGTCGCACGGATTGGTATCGGTGACTGGACGGAGCAGAGCGATGGAGGATACAGTGAAAGTAGAGAGAGAATTGTTCGGCGGAGAATTCCAGTTCTTCGCGATAGAAGGGAGAATACTAGTAGATTGGGAGGAAGTAATGAGGGCGTGTTTTGCGGAGATGGATAAAGAAGTGAATGGGGATCATGATGGGAATAAGGGGGAAGCTGCGTCGGGGATGGAGGTAGGGTCGACGGCGGTGGTAGTGATGGTGGGGAAGGAGGAGGTTGTTGTGGCCAATTGCGGTGACTCTAGGGCGGTGCTCTGTTGCGGCGGTGTTGCTCTGCCTTTGTCAATTGATCACAAGCCTGACAGGCCCGATGAAACGGAGAGAGTGGAAGCCGCAGGAGGGATAATCATTAACTGGAATGGCAGCCGCGTCTGTGGATTGCTTGCTACTTCAAGATCCATAGGAGATCAACACTTGAGACCGTATGTAATCTCCGAGCCAGAGGTGACAGTGACCAAACGAACAGGGGCAGATGAGTTCCTCATAATAGCAACAGATGGTTTATGGGACATGGTGTCCAACAAAGTTGCTTGCAATTTTGTGAGAGATTATTTCAACGGACAAATTAGGAAGAGTGTCGCTGTGCGAAGTAGAGCCAGGAAGGCAGCGACTATGCTAGCAGAGCTAGCCATGGCTAAGGGGAGCGCAGACAATATTAGTGTCATAATAGTTGTGCTTAAAAGGTGA

Network for GWHGAAZE005959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	103	295	1.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.024
	SRR3591706	second leaf	0.498
	SRR3591707	mature leaf	0.283
	SRR3591708	Shoot apex	2.142
	SRR3591709	Stem	0.626
	SRR3591710	White floral bud	1.279
	SRR3591711	White flower	2.438
	SRR3591712	Green floral bud	0.530
	SRR3591713	Yellow flower	0.969
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.103
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.036
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.078
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.030
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.182
	CNS0095599	Silvery flower (diploied) 2	0.723
	CNS0095600	Silvery flower (diploied) 3	0.090
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.075
	CNS0095603	Golden flower (diploid) 3	0.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.051
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.183
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.181
	CNS0095612	Silvery flower (tetraploid) 3	0.591
	CNS0095613	Golden flower (tetraploid) 1	0.132
	CNS0095614	Golden flower (tetraploid) 2	0.195
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.063
	CRR073298	Stem 2	0.089
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.153
	CRR073301	Leaf 2	0.098
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.004
	CRR073305	Juvenile bud 3	0.034
	CRR073306	Third green 1	3.386
	CRR073307	Third green 2	0.604
	CRR073308	Third green 3	1.079
	CRR073309	Second white 1	0.962
	CRR073310	Second white 2	2.283
	CRR073311	Second white 3	0.392
	CRR073312	Silver flowering 1	0.860
	CRR073313	Silver flowering 2	0.410
	CRR073314	Silver flowering 3	0.434
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.103
	CRR073319	Tawny withering 2	0.567
	CRR073320	Tawny withering 3	0.000