Gene detail

Detail information of GWHGAAZE005957

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP12153.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9T0A0\|LACS4_ARATH	Long chain acyl-CoA synthetase 4
trEMBL	tr\|A0A068UX04\|A0A068UX04_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12153.1}
TAIR10	AT4G23850.1	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16810226	16825797	+
GWHAAZE00000002	mRNA	16810226	16825797	+
GWHAAZE00000002	exon	16810226	16810395	+
GWHAAZE00000002	exon	16812325	16812388	+
GWHAAZE00000002	exon	16812495	16812584	+
GWHAAZE00000002	exon	16813135	16813191	+
GWHAAZE00000002	exon	16814765	16814813	+
GWHAAZE00000002	exon	16815063	16815139	+
GWHAAZE00000002	exon	16821772	16821939	+
GWHAAZE00000002	exon	16822101	16822211	+
GWHAAZE00000002	exon	16822328	16822415	+
GWHAAZE00000002	exon	16822851	16822917	+
GWHAAZE00000002	exon	16823294	16823369	+
GWHAAZE00000002	exon	16823483	16823600	+
GWHAAZE00000002	exon	16824495	16824740	+
GWHAAZE00000002	exon	16824848	16824987	+
GWHAAZE00000002	exon	16825367	16825549	+
GWHAAZE00000002	exon	16825660	16825797	+
GWHAAZE00000002	five_prime_UTR	16810226	16810243	+
GWHAAZE00000002	CDS	16810244	16810395	+
GWHAAZE00000002	CDS	16812325	16812388	+
GWHAAZE00000002	CDS	16812495	16812584	+
GWHAAZE00000002	CDS	16813135	16813191	+
GWHAAZE00000002	CDS	16814765	16814813	+
GWHAAZE00000002	CDS	16815063	16815139	+
GWHAAZE00000002	CDS	16821772	16821939	+
GWHAAZE00000002	CDS	16822101	16822211	+
GWHAAZE00000002	CDS	16822328	16822415	+
GWHAAZE00000002	CDS	16822851	16822917	+
GWHAAZE00000002	CDS	16823294	16823369	+
GWHAAZE00000002	CDS	16823483	16823600	+
GWHAAZE00000002	CDS	16824495	16824740	+
GWHAAZE00000002	CDS	16824848	16824987	+
GWHAAZE00000002	CDS	16825367	16825549	+
GWHAAZE00000002	CDS	16825660	16825797	+

Transcript Sequence
>GWHTAAZE005965 GAGAGAGAGAGAGCGGTGATGGAGCAAAAGAGTTATATAGTGGAGATCGAACCGGCGAAGGAAGCTTGCGATGGAAAGCCTTCCATGGGGCCGGTCTACCGGAGTTTGTTCGCTAAAGATGGATTTCCACCTCCGATTGAAGGCTTGGACAGTTGCTGGGACATTTTTCGCTTGTCAGTAGAGAAATATCCTAATAATCCAATGCTTGGTCGTCGTGAGTTTGTGGATGGAAAGCCTGGTAAGTATGTGTGGCTGACTTACAAAGAAGCATATGACATGGTGATAAAAATTGGCAATTCCATCCGCAGTTGTGGCGTGCAGGAAGGAGGACAATGTGGTATTTATGGTGCCAATTGCTCAGAATGGATAATGAGCATGGAGGCGTGCAATGCTCATGGGCTCCATTGTGTTCCTTTATATGACACATTAGGCGCTGGTGCCGTGGAATTTATCATATGCCACGCCGAGGTTACAATTGTGTTTGTAGAAGAAAAAAAACTTCCCGAGGGAAATAATGAACACTTTGACCTTCCAGTGAAAAAGAAAAGCGACATTTGTACAATAATGTACACTAGTGGAACAACTGGCGACCCCAAGGGTGTCATGATTTCCAATAATAGCATTGTTACTCTTATTGCTGGAGTGAAGCGCCTGCTAGAGAGTGTGAATGAAGCGTTGACTGGGAACGATGTATATCTTTCATATCTTCCTCTGGCACATATCTTTGATCGGGTCATTGAAGAGTGTTTCATCAATCATGGGGCTTCAATAGGATTCTGGCGTGGGGATGTCAAATTGTTGACCGAAGATATCGCGGAGCTAAAACCTACAATATTCTGTGCTGTTCCCCGTGTATTGGATAGAATTTATTCAGGTTTACAGCAGAAGATTTCTGCAGGGGGGTTCTTAAAACATACACTGTTTAAACTTGCACACTCCTACAAATTTCATAACATGAAAAAGGGACATAAGCATTCAGAGGCAGCTCCAATTTGTGACAAAGTTGTTTTCAGTAAGGTGAAGCAAGGACTTGGGGGACGGGTACGGCTAATTCTATCTGGAGCAGCACCTCTTGCTACGCATGTAGAAGCTTTTCTACGGGTGGTGGCATGTTGTCACGTTCTTCAAGGATATGGCCTGACAGAAAGCTGTGCGGGTACATTTGTCTCACTACCAAATGAGTTGGATATGTTGGGTACAGTGGGCCCCCCGGTACCCAATGTGGATGCATGTTTAGAATCTGTTCCTGAAATGGGATATGATGCACTTGCAATCACACCTCGTGGAGAAATATGCATAAGGGGTGATACCGTATTTTCAGGGTACTACAAACGTGAAGACCTCACTAAAGAGGTCCTGATTGATGGCTGGCTCCACACAGGGGATATTGGCGAGTGGCAACCAAATGGAAGCATGAAAATTGTCGACCGCAAGAAGAACATTTTCAAGCTCTCACAAGGAGAGTATGTGGCAGTTGAAAACTTGGAGAATATTTATGGTCTTGTTGCTGATATTGACTCGATATGGATATATGGGAATAGTTTTGAATCCTTCCTAGTTGCTATTGTTAACCCAAATAAGCAAGCAATTGAAAGGTGGGCTGAAGAGAATGGTGTTTCAGGGGATTTTGTTTCCTTGTGTGAAAATCCCAAAGTGATAGAGTACTTACTAGGAGAGCTAACAAGGATTGGAAAAGAGAAAAAGTTGAAAGGTTTTGAGTTGATCAAAGCTCTTCACCTTGACCCTGAGCCATTTGACATGGATCGTGACCTTCTCACCCCTACTTTTAAGAAGAAAAGGCCACAGTTGCTCAAATACTACCAGGTAGTTCCCAATACTTAA

Network for GWHGAAZE005957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	53	479	3.60E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.463
	SRR3591706	second leaf	62.848
	SRR3591707	mature leaf	87.582
	SRR3591708	Shoot apex	67.853
	SRR3591709	Stem	87.948
	SRR3591710	White floral bud	137.843
	SRR3591711	White flower	82.812
	SRR3591712	Green floral bud	106.630
	SRR3591713	Yellow flower	101.327
SRP173429	SRR8316895	Juvenile bud stage	60.608
	SRR8316896	Juvenile bud stage	103.877
	SRR8316897	Juvenile bud stage	51.570
	SRR8316894	Third green stage	45.240
	SRR8316900	Third green stage	148.743
	SRR8316901	Third green stage	129.660
	SRR8316898	Complete white stage	102.794
	SRR8316899	Complete white stage	136.613
	SRR8316903	Complete white stage	160.856
	SRR8316902	Silver flowering stage	39.519
	SRR8316904	Silver flowering stage	53.222
	SRR8316905	Silver flowering stage	26.935
	SRR8316906	Gold flowering stage	101.697
	SRR8316907	Gold flowering stage	68.811
	SRR8316908	Gold flowering stage	105.079
SRP132670	SRR6706286	Control	167.566
	SRR6706287	Light intensity 50%	174.097
	SRR6706288	Light intensity 20%	171.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	74.927
	CNS0095593	Slightly white alabastrum(diploid) 2	63.190
	CNS0095594	Slightly white alabastrum(diploid) 3	72.034
	CNS0095595	Whole white alabastrum(diploid) 2	57.632
	CNS0095596	Whole white alabastrum(diploid) 3	49.764
	CNS0095597	Whole white alabastrum(diploid) 4	66.099
	CNS0095598	Silvery flower (diploied) 1	58.914
	CNS0095599	Silvery flower (diploied) 2	64.009
	CNS0095600	Silvery flower (diploied) 3	88.453
	CNS0095601	Golden flower (diploid) 1	54.636
	CNS0095602	Golden flower (diploid) 2	85.949
	CNS0095603	Golden flower (diploid) 3	84.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.264
	CNS0095609	Whole white alabastrum(tetraploid) 3	197.033
	CNS0095610	Silvery flower (tetraploid) 1	87.922
	CNS0095611	Silvery flower (tetraploid) 2	81.596
	CNS0095612	Silvery flower (tetraploid) 3	49.163
	CNS0095613	Golden flower (tetraploid) 1	43.762
	CNS0095614	Golden flower (tetraploid) 2	72.147
	CNS0095615	Golden flower (tetraploid) 3	28.942
CRA001975	CRR073297	Stem 1	71.496
	CRR073298	Stem 2	71.338
	CRR073299	Stem 3	54.569
	CRR073300	Leaf 1	78.933
	CRR073301	Leaf 2	73.147
	CRR073302	Leaf 3	66.197
	CRR073303	Juvenile bud 1	59.128
	CRR073304	Juvenile bud 2	83.974
	CRR073305	Juvenile bud 3	70.384
	CRR073306	Third green 1	44.661
	CRR073307	Third green 2	36.965
	CRR073308	Third green 3	44.417
	CRR073309	Second white 1	23.642
	CRR073310	Second white 2	23.844
	CRR073311	Second white 3	23.135
	CRR073312	Silver flowering 1	31.427
	CRR073313	Silver flowering 2	24.230
	CRR073314	Silver flowering 3	27.133
	CRR073315	Gold flowering 1	41.072
	CRR073316	Gold flowering 2	61.162
	CRR073317	Gold flowering 3	45.039
	CRR073318	Tawny withering 1	42.716
	CRR073319	Tawny withering 2	38.702
	CRR073320	Tawny withering 3	39.163