Detail information of GWHGAAZE005949


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009598982.11.8133E-139PREDICTED: nucleoside diphosphate kinase 3-like [Nicotiana tomentosiformis]
Swissprottr|Q8RXA8|NDK4_SPIOL7E-136Nucleoside diphosphate kinase 4, chloroplastic (Precursor)
trEMBLtr|K4CPN9|K4CPN9_SOLLC6E-138Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}
TAIR10AT4G23900.18E-92Nucleoside diphosphate kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1669096916693963-
GWHAAZE00000002mRNA1669096916693963-
GWHAAZE00000002exon1669387916693963-
GWHAAZE00000002exon1669328016693414-
GWHAAZE00000002exon1669267616692713-
GWHAAZE00000002exon1669250816692558-
GWHAAZE00000002exon1669206916692236-
GWHAAZE00000002exon1669187516691987-
GWHAAZE00000002exon1669096916691291-
GWHAAZE00000002CDS1669387916693963-
GWHAAZE00000002CDS1669328016693414-
GWHAAZE00000002CDS1669267616692713-
GWHAAZE00000002CDS1669250816692558-
GWHAAZE00000002CDS1669206916692236-
GWHAAZE00000002CDS1669187516691987-
GWHAAZE00000002CDS1669117116691291-
GWHAAZE00000002three_prime_UTR1669096916691170-
Transcript Sequence

Network for GWHGAAZE005949

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00334.20NDK882214.10E-53
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00940ndk, NME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Drug metabolism - other enzymesmap00983
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0006165biological_processnucleoside diphosphate phosphorylation
GO:0006183biological_processGTP biosynthetic process
GO:0006228biological_processUTP biosynthetic process
GO:0006241biological_processCTP biosynthetic process
GO:0004550molecular_functionnucleoside diphosphate kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.778
SRR3591706second leaf42.514
SRR3591707mature leaf15.212
SRR3591708Shoot apex25.066
SRR3591709Stem40.400
SRR3591710White floral bud38.669
SRR3591711White flower17.093
SRR3591712Green floral bud81.636
SRR3591713Yellow flower5.747
SRP173429 SRR8316895Juvenile bud stage 40.530
SRR8316896Juvenile bud stage 57.183
SRR8316897Juvenile bud stage 24.956
SRR8316894Third green stage 17.453
SRR8316900Third green stage 47.315
SRR8316901Third green stage 41.098
SRR8316898Complete white stage 3.892
SRR8316899Complete white stage 7.592
SRR8316903Complete white stage 5.510
SRR8316902Silver flowering stage2.199
SRR8316904Silver flowering stage2.351
SRR8316905Silver flowering stage1.425
SRR8316906Gold flowering stage 5.455
SRR8316907Gold flowering stage 5.075
SRR8316908Gold flowering stage 6.164
SRP132670SRR6706286Control33.468
SRR6706287Light intensity 50%37.372
SRR6706288Light intensity 20%36.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 176.823
CNS0095593Slightly white alabastrum(diploid) 261.750
CNS0095594Slightly white alabastrum(diploid) 3102.711
CNS0095595Whole white alabastrum(diploid) 269.645
CNS0095596Whole white alabastrum(diploid) 355.108
CNS0095597Whole white alabastrum(diploid) 463.706
CNS0095598Silvery flower (diploied) 131.514
CNS0095599Silvery flower (diploied) 216.697
CNS0095600Silvery flower (diploied) 37.362
CNS0095601Golden flower (diploid) 17.409
CNS0095602Golden flower (diploid) 26.069
CNS0095603Golden flower (diploid) 37.300
CNS0095604Slightly white alabastrum(tetraploid) 185.681
CNS0095605Slightly white alabastrum(tetraploid) 271.296
CNS0095606Slightly white alabastrum(tetraploid) 378.773
CNS0095607Whole white alabastrum(tetraploid) 181.342
CNS0095608Whole white alabastrum(tetraploid) 243.764
CNS0095609Whole white alabastrum(tetraploid) 345.070
CNS0095610Silvery flower (tetraploid) 12.686
CNS0095611Silvery flower (tetraploid) 210.076
CNS0095612Silvery flower (tetraploid) 33.731
CNS0095613Golden flower (tetraploid) 11.747
CNS0095614Golden flower (tetraploid) 21.480
CNS0095615Golden flower (tetraploid) 30.973
CRA001975CRR073297Stem 166.231
CRR073298Stem 246.854
CRR073299Stem 359.765
CRR073300Leaf 129.449
CRR073301Leaf 236.134
CRR073302Leaf 330.895
CRR073303Juvenile bud 114.055
CRR073304Juvenile bud 213.732
CRR073305Juvenile bud 35.422
CRR073306Third green 12.400
CRR073307Third green 24.935
CRR073308Third green 33.405
CRR073309Second white 15.587
CRR073310Second white 23.584
CRR073311Second white 31.696
CRR073312Silver flowering 13.722
CRR073313Silver flowering 24.649
CRR073314Silver flowering 33.609
CRR073315Gold flowering 121.707
CRR073316Gold flowering 223.146
CRR073317Gold flowering 321.058
CRR073318Tawny withering 12.433
CRR073319Tawny withering 21.884
CRR073320Tawny withering 36.421