Detail information of GWHGAAZE005946


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010661643.10PREDICTED: origin recognition complex subunit 4 isoform X2 [Vitis vinifera]
Swissprottr|Q6EWX1|ORC4_ARATH1E-174Origin of replication complex subunit 4 {ECO:0000303|PubMed:16179646}
trEMBLtr|M1CZZ9|M1CZZ9_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400078378}
TAIR10AT2G01120.12E-134origin recognition complex subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1662369216647276-
GWHAAZE00000002mRNA1662369216647276-
GWHAAZE00000002exon1664693516647276-
GWHAAZE00000002exon1664592916645985-
GWHAAZE00000002exon1664492716644977-
GWHAAZE00000002exon1664479716644840-
GWHAAZE00000002exon1664455416644617-
GWHAAZE00000002exon1664421416644300-
GWHAAZE00000002exon1664314716643238-
GWHAAZE00000002exon1664296716643048-
GWHAAZE00000002exon1664253016642615-
GWHAAZE00000002exon1664232016642429-
GWHAAZE00000002exon1663993816640030-
GWHAAZE00000002exon1663978116639845-
GWHAAZE00000002exon1663952716639670-
GWHAAZE00000002exon1663076616630875-
GWHAAZE00000002exon1662815316629124-
GWHAAZE00000002exon1662369216624664-
GWHAAZE00000002CDS1664693516647276-
GWHAAZE00000002CDS1664592916645985-
GWHAAZE00000002CDS1664492716644977-
GWHAAZE00000002CDS1664479716644840-
GWHAAZE00000002CDS1664455416644617-
GWHAAZE00000002CDS1664421416644300-
GWHAAZE00000002CDS1664314716643238-
GWHAAZE00000002CDS1664296716643048-
GWHAAZE00000002CDS1664253016642615-
GWHAAZE00000002CDS1664232016642429-
GWHAAZE00000002CDS1663993816640030-
GWHAAZE00000002CDS1663978116639845-
GWHAAZE00000002CDS1663952716639670-
GWHAAZE00000002CDS1663076616630875-
GWHAAZE00000002CDS1662815316629124-
GWHAAZE00000002CDS1662369216624664-
Transcript Sequence

Network for GWHGAAZE005946

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA1022323.70E-05
PF14629.7ORC4_C2474305.00E-36
PF01764.26Lipase_35986365.50E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02606ORC4 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0006629biological_processlipid metabolic process
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.182
SRR3591706second leaf19.877
SRR3591707mature leaf8.035
SRR3591708Shoot apex23.862
SRR3591709Stem10.396
SRR3591710White floral bud10.344
SRR3591711White flower8.930
SRR3591712Green floral bud18.670
SRR3591713Yellow flower5.585
SRP173429 SRR8316895Juvenile bud stage 5.454
SRR8316896Juvenile bud stage 6.543
SRR8316897Juvenile bud stage 4.022
SRR8316894Third green stage 4.108
SRR8316900Third green stage 10.941
SRR8316901Third green stage 10.100
SRR8316898Complete white stage 2.494
SRR8316899Complete white stage 12.699
SRR8316903Complete white stage 3.979
SRR8316902Silver flowering stage0.969
SRR8316904Silver flowering stage1.274
SRR8316905Silver flowering stage0.772
SRR8316906Gold flowering stage 3.229
SRR8316907Gold flowering stage 3.004
SRR8316908Gold flowering stage 2.840
SRP132670SRR6706286Control11.273
SRR6706287Light intensity 50%12.977
SRR6706288Light intensity 20%14.279
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.950
CNS0095593Slightly white alabastrum(diploid) 28.754
CNS0095594Slightly white alabastrum(diploid) 36.395
CNS0095595Whole white alabastrum(diploid) 26.645
CNS0095596Whole white alabastrum(diploid) 35.161
CNS0095597Whole white alabastrum(diploid) 45.622
CNS0095598Silvery flower (diploied) 15.904
CNS0095599Silvery flower (diploied) 24.024
CNS0095600Silvery flower (diploied) 34.709
CNS0095601Golden flower (diploid) 13.482
CNS0095602Golden flower (diploid) 23.967
CNS0095603Golden flower (diploid) 33.533
CNS0095604Slightly white alabastrum(tetraploid) 110.130
CNS0095605Slightly white alabastrum(tetraploid) 28.328
CNS0095606Slightly white alabastrum(tetraploid) 317.897
CNS0095607Whole white alabastrum(tetraploid) 16.397
CNS0095608Whole white alabastrum(tetraploid) 23.887
CNS0095609Whole white alabastrum(tetraploid) 36.534
CNS0095610Silvery flower (tetraploid) 13.612
CNS0095611Silvery flower (tetraploid) 24.710
CNS0095612Silvery flower (tetraploid) 35.267
CNS0095613Golden flower (tetraploid) 12.949
CNS0095614Golden flower (tetraploid) 23.406
CNS0095615Golden flower (tetraploid) 33.886
CRA001975CRR073297Stem 112.498
CRR073298Stem 211.932
CRR073299Stem 38.554
CRR073300Leaf 117.415
CRR073301Leaf 215.316
CRR073302Leaf 311.528
CRR073303Juvenile bud 111.891
CRR073304Juvenile bud 29.147
CRR073305Juvenile bud 311.240
CRR073306Third green 14.381
CRR073307Third green 23.757
CRR073308Third green 33.451
CRR073309Second white 12.644
CRR073310Second white 21.498
CRR073311Second white 31.965
CRR073312Silver flowering 12.625
CRR073313Silver flowering 22.686
CRR073314Silver flowering 31.713
CRR073315Gold flowering 13.448
CRR073316Gold flowering 23.788
CRR073317Gold flowering 31.992
CRR073318Tawny withering 16.353
CRR073319Tawny withering 25.963
CRR073320Tawny withering 36.979