Gene detail

Detail information of GWHGAAZE005938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265315.1	0	PREDICTED: uncharacterized protein At4g10930-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8L7I1\|Y4193_ARATH	0	Uncharacterized protein At4g10930
trEMBL	tr\|F6HU30\|F6HU30_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58253.1}
TAIR10	AT4G10930.1	7E-168	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16494906	16504730	-
GWHAAZE00000002	mRNA	16494906	16504730	-
GWHAAZE00000002	exon	16494906	16495142	-
GWHAAZE00000002	exon	16495500	16496549	-
GWHAAZE00000002	exon	16497049	16497071	-
GWHAAZE00000002	exon	16497564	16497642	-
GWHAAZE00000002	exon	16497722	16499004	-
GWHAAZE00000002	exon	16499139	16499225	-
GWHAAZE00000002	exon	16499336	16499842	-
GWHAAZE00000002	exon	16500383	16500448	-
GWHAAZE00000002	exon	16501191	16501350	-
GWHAAZE00000002	exon	16502512	16502581	-
GWHAAZE00000002	exon	16502894	16503082	-
GWHAAZE00000002	exon	16503172	16503288	-
GWHAAZE00000002	exon	16504010	16504101	-
GWHAAZE00000002	exon	16504662	16504730	-
GWHAAZE00000002	CDS	16504662	16504730	-
GWHAAZE00000002	CDS	16504010	16504101	-
GWHAAZE00000002	CDS	16503172	16503288	-
GWHAAZE00000002	CDS	16502894	16503082	-
GWHAAZE00000002	CDS	16502512	16502581	-
GWHAAZE00000002	CDS	16501191	16501350	-
GWHAAZE00000002	CDS	16500383	16500448	-
GWHAAZE00000002	CDS	16499336	16499842	-
GWHAAZE00000002	CDS	16499139	16499225	-
GWHAAZE00000002	CDS	16497722	16499004	-
GWHAAZE00000002	CDS	16497564	16497642	-
GWHAAZE00000002	CDS	16497049	16497071	-
GWHAAZE00000002	CDS	16495500	16496549	-
GWHAAZE00000002	CDS	16494906	16495142	-

Transcript Sequence
>GWHTAAZE005946 ATGGAAGTGGATTTAGTGACGGAGAGCGCACTAGAAGAAGGAACCCTTGGAGTTGATGATAATAATGATTATTCAACTTTTGAGGGTGAAAGATGTGGGATATGCATGGATGTTGTAATTGACAGAGGTGTTCTTGATTGCTGTCAACATTGGTATATGCCGTTTTGTTTTGCATGCATTGACAACTGGGCTACAATCACAAATCTATGCCCGCTTTGCCAGAATGAATTTCAACTGATCACATGCGTCCCTGTAAGTGATAAAGTTGTTGGATCATTCCTTTTCTTACTTTCATCTCTTTGTGCTGATGCTGATGGCTTGGCAAAAGGAAAAAACAGGCCTCTTGATAAGTTGATATATGAAGTTCTTTTCTGCAACGACACCTTTATACCTACTTATGCATTTCAACTGTTTCTGAAGGTATATGATACCATTGGAAGCAACAATGCGGATGATGATTTGACCAGAGATGATGATTGGTGCATTGAAGGGAAGAATAACACTTTGTCTTTTCCATCATATTATATTGATGAAAATGCAGTTGTCTGTTTGGACGGAGATGACTGCAAAGTTCGAAGCAGATCTGTGACAATTGAAGAAGATTCAAATCTTGATACATCCATTGCTTGTGATTCATGTGATATATGGTATGATTGTAAATTTTTAGATCTATTAACTTTTAAATATGTTCCTTTACGTATCATGCTTTTTGTGTGGGATTTGATACTGAAGGTACTTGTGAGAATTCATGGTTATGTCCAAGAGAATGCTAGCAGTGAATGTTTGGTTGAGGCTGCTTTCTCGGGGAAAGTGTCAGTATCTATTGCGGATGCTGGAGAAACAGCTGTTGTTGTCTCATTGGTTGAAGGAAACCGAGGGACTGAGGAATCAAGCAGAAATTTCTTGCCAATCTTAGATGTCTGTAAGGATCCGGAAGTTGATGCTCTGAAACATAATCCCTGTGCCAATACATTGCTATCTAGTTGTGCCAATAATCATAAGTTGGAAACCCCATCAAGCGAAAGGAGTAGCATAGAACCAAATTTGAGGACACAAGAACTAGAACTTACTTTATCAAAAGTTACACCGTTTAGTGCACCTTCGAATTCCTTGGATTTTACTGAGTTGACAAGTTCTGATGATAAAGTGACGGGCAGACCTGCCTTTGATGGGTTTGGTTCTTCAAGCAAATCGCTTGGTGAACTTCAGAGTAATGAATCTCATGGTTTAGATCTCCATCTTGGTTTATCTGCCTGCCCTTCTTCTTCTGTCAACAAAATGAGCAACAACCTAGCTGAAGATCAAGTAGGTGGAGATTTGAAGCAGAACCATATTTCAGGAGAATGCTTGTTACCAGCTGACAAGGTTATACCGGACAAAAAGGAGAATGTTGTTGAAACTACTGGTGCGAAGAGAAAGCATAGAGGTGTTGAGAATGGAGAAACGAAAGCTAAAATTGGGAGTAAAGTTTCTGCAAAGAAAGTGAAAGCTGAGGGAAAGAATCAGCTCACTCATTTGAAAGACCAAGCTGATAAATCTGCTTCAGACGACCCCCAAAAATCTTCAAGTTTAACCTCTGCTCATAAAGATGACAAATTGAGAAGTCAATCTGACAAGGAAAATGTCAGTACCGGGATAATGGATATAGTTCAGGGTACATATCATAGACCTCTAAAGCAAAGTGCCCGCTCCAATCTTGTAGATACATCCTCTACAGAAAGAGAAAAAGCTGCTGGTTTGAGGGTAAAAAAGATCATGAGGAGATCCACTGAGGATAAGGAGTCGTCCCTTCTAGTTCAAAAGCTAAGAAAAGAAATCAGAGATGCGGTCCGTAATAAATCATCTAAAGAACTTGGGGGCAATCTTTATGATCCGAAACTTCTTGCTGCTTTTAGGGCTGTAGTGGCCGCACCAAAGACTGAAATTAAAAGGCCACCGCCTCTGGATGTGAGGGCAAAGAAGTCATTGTTGCAAAAGGGAAAAATACGCGAAAGTTTAACAAAAAAAATATACGGGATTGGTGGTAGACGGAAACGGGCCTGGACCCGCGATTGTGAGATTGAATTTTGGAAGCATCGTTGCTTGAAAGTTGGTAAGCCTGAAAAAATTGAGACATTGAAGTCCGTTCTAAGCCTCCTAAGAACGAATTCTGAGAGCAGGGAACAGAAGCAGGGATGTGAAAGTGGGCCCACCACAAGTTCGATTCTTTCGAGGTTGTATTTAGCTGATGCATCTGTTTTCCCACGGAAGGATGATATTAAGCCTCTCTCTGCTCTCAAAAATACTGAACAAAATAAAGAATGCACGTCAATGGAAAAGGCTATTGTTCCTAAAGTGGATAACACAGGGACCAAAAGTAATGATGCAAGCATAAAAAGTGAAGCTTCTTCGATTAAAGTACATTCAAACAGACAACTAGAAGGGCCGTCTGGGTCTACATTAGGTGGGTCTAAGGCAAACTCCCAGAAGGAGACGGGCAAATCTGATGATATAAAGACCGACAAAAGGAAGTGGGCCCTACAGGTTCTTGCCAGAAAAACGGCAGTCGCAGGCAAGAATGCAGCACAGGAACAAGACAATGCTGTGCTCAAAGGCCACTATCCTTTATTAGTACGTCGTGTTTTTGTTACTAGATGCAATGCTCAACTACCTGCAGATATGCGGCCAGTTTTAGCACCCAGTCGTCATAATAAAATCTCAATATCAGTTAGGCAGGTAACTGGATTGTCAAGAACACTTGTGGTTATAAATAATTTTACAAAATGTCTGCTTGTGCAGGTCCAACTTCACCGCCTCACTGAGCACTTTCTAAAGAAAGCAAATATGCCCGTCACTCGCAGAACTGCGGAAATAGAACTGGCTGTTGCAGACGCAGTCAATATTGAAAAGGAGGTTGCTGATAGGTCAAGCAGTAAGCTGGTATATGTGAATCTGTGTTCTCAAGAGCTTTTGCGCAGAGCAGATACGGTCACGGAATCAAACCCTAACCCAGATCCAGCAGTCCATGCTGACAAACTAGATGAAGCTACAAAAGATCTTTCTTCTTGTTCAGAGGTTGATGAGGCACTAAGAAATGCTGGACTTTTATCCGATTCCCCTCCTACTAGCCCACATCACGAAAGGGAAGAAATTGACGAAGTAGGTCCTTCAAAAGATATCAAAGAGGATGGGCCATATAATATCTTCGAAATAGATTCTCAAGCAGAACTTGATATATATGGAGATTTCGAGTATGATTTGGAAGATGAAGACTTTATAGGTGCTAGTGCTTTAAAGATATCCGAGCCAATACCAGAAGAGTCAAAAATGAAAGTGGTCTTCTCAACCCTAGATTCTGATGGATCCAAAGGTGCTCAGGAGTCTGAGGATCCTGAAAAACAAGCAGGTTTAGAAGAACCGAAGGGTCCTTGTACTGACACGAGCATTTTAATCTCTAGCATGGAGCACAAGACAGATGAGTGCCCTCCTCAAAACCCTTTACCTGATGGAGGTGAAGAGCTTTCTTTTGCAGAATGTGAAGAGTTATATGGCCCTGATAAAGAACCGCTGATTAAAAGGTTTCCAGAAAGGGCATTGATAAAGCGTTGTGAACCGATTCCTGAGAATGTAGATCAGGGGGGAAATGAAGACCAGAGACCTTCAAAGGAGGCTGAATCAACCTCTATTATCCACCGGAGTTCTGGTGGAAAAGATTCATCCAACCTGCCTCAAAAGAATTCATTAAGGAAGGAGAATACATCTAATATTGACACCGGAAAGAAGTTAGATAGCTGCAATTCTGTACGCAAGAAGGGGGAATTTTATGAGTACGTGCAGGTGGAAGCCTACATAAAAGAGCACATAAGACCGCTGTGCAAGAGTGGGGTGATCACAGTGGAACAATATAGGTGGGCTGTGGGAAAAACAACCGATAAGATTATGAAATACCACACCAAAGACACAAATGCTAATTTCCTCATCAAGGAAGGTGAGAAAGTGAAGAAACTTGCTGAACAATATGTGGAAACAGCCCAAACGGGAAAGAAGTAA

Network for GWHGAAZE005938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAZE005942
MEVDLVTESALEEGTLGVDDNNDYSTFEGERCGICMDVVIDRGVLDCCQHWYMPFCFACIDNWATITNLCPLCQNEFQLITCVPVSDKVVGSFLFLLSSLCADADGLAKGKNRPLDKLIYEVLFCNDTFIPTYAFQLFLKVYDTIGSNNADDDLTRDDDWCIEGKNNTLSFPSYYIDENAVVCLDGDDCKVRSRSVTIEEDSNLDTSIACDSCDIWYDCKFLDLLTFKYVPLRIMLFVWDLILKVLVRIHGYVQENASSECLVEAAFSGKVSVSIADAGETAVVVSLVEGNRGTEESSRNFLPILDVCKDPEVDALKHNPCANTLLSSCANNHKLETPSSERSSIEPNLRTQELELTLSKVTPFSAPSNSLDFTELTSSDDKVTGRPAFDGFGSSSKSLGELQSNESHGLDLHLGLSACPSSSVNKMSNNLAEDQVGGDLKQNHISGECLLPADKVIPDKKENVVETTGAKRKHRGVENGETKAKIGSKVSAKKVKAEGKNQLTHLKDQADKSASDDPQKSSSLTSAHKDDKLRSQSDKENVSTGIMDIVQGTYHRPLKQSARSNLVDTSSTEREKAAGLRVKKIMRRSTEDKESSLLVQKLRKEIRDAVRNKSSKELGGNLYDPKLLAAFRAVVAAPKTEIKRPPPLDVRAKKSLLQKGKIRESLTKKIYGIGGRRKRAWTRDCEIEFWKHRCLKVGKPEKIETLKSVLSLLRTNSESREQKQGCESGPTTSSILSRLYLADASVFPRKDDIKPLSALKNTEQNKECTSMEKAIVPKVDNTGTKSNDASIKSEASSIKVHSNRQLEGPSGSTLGGSKANSQKETGKSDDIKTDKRKWALQVLARKTAVAGKNAAQEQDNAVLKGHYPLLVRRVFVTRCNAQLPADMRPVLAPSRHNKISISVRQVTGLSRTLVVINNFTKCLLVQVQLHRLTEHFLKKANMPVTRRTAEIELAVADAVNIEKEVADRSSSKLVYVNLCSQELLRRADTVTESNPNPDPAVHADKLDEATKDLSSCSEVDEALRNAGLLSDSPPTSPHHEREEIDEVGPSKDIKEDGPYNIFEIDSQAELDIYGDFEYDLEDEDFIGASALKISEPIPEESKMKVVFSTLDSDGSKGAQESEDPEKQAGLEEPKGPCTDTSILISSMEHKTDECPPQNPLPDGGEELSFAECEELYGPDKEPLIKRFPERALIKRCEPIPENVDQGGNEDQRPSKEAESTSIIHRSSGGKDSSNLPQKNSLRKENTSNIDTGKKLDSCNSVRKKGEFYEYVQVEAYIKEHIRPLCKSGVITVEQYRWAVGKTTDKIMKYHTKDTNANFLIKEGEKVKKLAEQYVETAQTGKK

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.175
	SRR3591706	second leaf	11.101
	SRR3591707	mature leaf	12.171
	SRR3591708	Shoot apex	16.544
	SRR3591709	Stem	20.637
	SRR3591710	White floral bud	15.172
	SRR3591711	White flower	22.924
	SRR3591712	Green floral bud	12.627
	SRR3591713	Yellow flower	18.658
SRP173429	SRR8316895	Juvenile bud stage	12.819
	SRR8316896	Juvenile bud stage	14.880
	SRR8316897	Juvenile bud stage	7.816
	SRR8316894	Third green stage	7.183
	SRR8316900	Third green stage	16.785
	SRR8316901	Third green stage	16.799
	SRR8316898	Complete white stage	7.765
	SRR8316899	Complete white stage	20.564
	SRR8316903	Complete white stage	16.502
	SRR8316902	Silver flowering stage	10.227
	SRR8316904	Silver flowering stage	16.796
	SRR8316905	Silver flowering stage	7.108
	SRR8316906	Gold flowering stage	23.823
	SRR8316907	Gold flowering stage	20.612
	SRR8316908	Gold flowering stage	26.480
SRP132670	SRR6706286	Control	10.314
	SRR6706287	Light intensity 50%	11.822
	SRR6706288	Light intensity 20%	11.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.943
	CNS0095593	Slightly white alabastrum(diploid) 2	10.516
	CNS0095594	Slightly white alabastrum(diploid) 3	8.062
	CNS0095595	Whole white alabastrum(diploid) 2	8.678
	CNS0095596	Whole white alabastrum(diploid) 3	7.186
	CNS0095597	Whole white alabastrum(diploid) 4	7.945
	CNS0095598	Silvery flower (diploied) 1	18.638
	CNS0095599	Silvery flower (diploied) 2	11.746
	CNS0095600	Silvery flower (diploied) 3	24.557
	CNS0095601	Golden flower (diploid) 1	14.656
	CNS0095602	Golden flower (diploid) 2	25.360
	CNS0095603	Golden flower (diploid) 3	24.873
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.109
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.825
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.998
	CNS0095610	Silvery flower (tetraploid) 1	24.913
	CNS0095611	Silvery flower (tetraploid) 2	24.319
	CNS0095612	Silvery flower (tetraploid) 3	25.555
	CNS0095613	Golden flower (tetraploid) 1	13.773
	CNS0095614	Golden flower (tetraploid) 2	20.969
	CNS0095615	Golden flower (tetraploid) 3	25.715
CRA001975	CRR073297	Stem 1	15.444
	CRR073298	Stem 2	12.515
	CRR073299	Stem 3	6.479
	CRR073300	Leaf 1	13.635
	CRR073301	Leaf 2	12.348
	CRR073302	Leaf 3	5.193
	CRR073303	Juvenile bud 1	5.554
	CRR073304	Juvenile bud 2	4.707
	CRR073305	Juvenile bud 3	6.927
	CRR073306	Third green 1	4.426
	CRR073307	Third green 2	2.014
	CRR073308	Third green 3	4.682
	CRR073309	Second white 1	2.946
	CRR073310	Second white 2	5.201
	CRR073311	Second white 3	4.664
	CRR073312	Silver flowering 1	3.639
	CRR073313	Silver flowering 2	2.821
	CRR073314	Silver flowering 3	4.856
	CRR073315	Gold flowering 1	2.651
	CRR073316	Gold flowering 2	5.645
	CRR073317	Gold flowering 3	1.062
	CRR073318	Tawny withering 1	5.496
	CRR073319	Tawny withering 2	6.393
	CRR073320	Tawny withering 3	5.978