Detail information of GWHGAAZE005920


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006428571.18.65949E-52hypothetical protein CICLE_v100108902mg, partial [Citrus clementina]
trEMBLtr|V4SXB3|V4SXB3_9ROSI3E-52Uncharacterized protein {ECO:0000313|EMBL:ESR41811.1} (Fragment)
TAIR10AT2G42270.18E-43U5 small nuclear ribonucleoprotein helicase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1620645916207063+
GWHAAZE00000002mRNA1620645916207063+
GWHAAZE00000002exon1620645916206814+
GWHAAZE00000002exon1620703916207063+
GWHAAZE00000002CDS1620645916206814+
GWHAAZE00000002CDS1620703916207063+
Transcript Sequence

Network for GWHGAAZE005920

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02889.17Sec6391201.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12854SNRNP200, BRR2 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.457
SRR8316896Juvenile bud stage 1.026
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.286
SRR8316900Third green stage 0.719
SRR8316901Third green stage 0.469
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.216
SRR8316902Silver flowering stage0.096
SRR8316904Silver flowering stage0.161
SRR8316905Silver flowering stage0.087
SRR8316906Gold flowering stage 0.106
SRR8316907Gold flowering stage 0.365
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.590
SRR6706287Light intensity 50%0.610
SRR6706288Light intensity 20%0.854
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.682
CNS0095593Slightly white alabastrum(diploid) 20.585
CNS0095594Slightly white alabastrum(diploid) 31.636
CNS0095595Whole white alabastrum(diploid) 20.632
CNS0095596Whole white alabastrum(diploid) 31.238
CNS0095597Whole white alabastrum(diploid) 40.101
CNS0095598Silvery flower (diploied) 10.100
CNS0095599Silvery flower (diploied) 20.144
CNS0095600Silvery flower (diploied) 30.594
CNS0095601Golden flower (diploid) 10.427
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.321
CNS0095604Slightly white alabastrum(tetraploid) 10.414
CNS0095605Slightly white alabastrum(tetraploid) 20.634
CNS0095606Slightly white alabastrum(tetraploid) 30.135
CNS0095607Whole white alabastrum(tetraploid) 10.755
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.382
CNS0095610Silvery flower (tetraploid) 10.422
CNS0095611Silvery flower (tetraploid) 20.777
CNS0095612Silvery flower (tetraploid) 30.263
CNS0095613Golden flower (tetraploid) 10.067
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.091
CRA001975CRR073297Stem 11.182
CRR073298Stem 20.000
CRR073299Stem 30.151
CRR073300Leaf 10.576
CRR073301Leaf 20.498
CRR073302Leaf 30.108
CRR073303Juvenile bud 10.366
CRR073304Juvenile bud 20.258
CRR073305Juvenile bud 31.193
CRR073306Third green 10.112
CRR073307Third green 20.000
CRR073308Third green 30.133
CRR073309Second white 10.414
CRR073310Second white 20.000
CRR073311Second white 30.190
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.110
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.061