Gene detail

Detail information of GWHGAAZE005918

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDX76355.1	1.8536E-118	BnaA08g10450D [Brassica napus]
trEMBL	tr\|M0SIY6\|M0SIY6_MUSAM	3E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P29700_001}
TAIR10	AT1G20960.2	8E-65	U5 small nuclear ribonucleoprotein helicase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16198274	16204739	+
GWHAAZE00000002	mRNA	16198274	16204739	+
GWHAAZE00000002	exon	16198274	16198429	+
GWHAAZE00000002	exon	16198615	16198879	+
GWHAAZE00000002	exon	16204306	16204739	+
GWHAAZE00000002	CDS	16198274	16198429	+
GWHAAZE00000002	CDS	16198615	16198879	+
GWHAAZE00000002	CDS	16204306	16204739	+

Transcript Sequence
>GWHTAAZE005926 ATGGAACTGGCAAAGCTTTTAGATCACGTACCCATTCCTGTCAAGGCAAGTTTGGAAGAGCCTAGTGCCAAGATAAATGTCTTACTATATGCATATATTTCTCAACTAAAGCTTGAAGGACTTTCTCTAACATCTGACATGGTATTCATAACTCAGCTAACTGAGAAGGCTCTGAACTTCTGCAAAATGGTTAACAAAAAGATGTGGAACGTCCAAACTCCGCTTTGTCAGTTCAATGGGATCCCAAATGAAATTTTGACGAAGTTGGAGAAGAAAGATTTGGCTTGGGAATGGTATTATGATCTATCATCACAGGAGATAGAAGAGCTTATTCGGTTTCCTAAGATGGGAAGAAACCTTAACAAGTTCATTCACCAATTCCCCAAACTTAACTTGGCAGCACATGTTCAGCCAATTACTCACAGATGGCTTGGGTCACAGTCTGTTTTGCCCGTTTCTTTCAGGCACCTTATTCTACCAGAAAAATACCCCCCACCAACAGAGTTGCTAGACTTGCAACCATTGCCTGTAACTGCATTACGGAATCCCTCATATGTAGCTCTATATCAAGAGTTTAAGCACTTCAACCCTGTTCAAACTCAGGTTTTCAGTGTCTTGTACAACACAGATGACAATGTCTTGGTTGCCACACCTACTGGAAGTGGGAGGACCATATGTGCAGAATTTGCCATACTGAGGAACCATCAGAAAGGACTAGATGGTGTCATGCTTGCTGTGTATATTGCTCCTGTTGAAGCTCTTGCCAAGGAACGGTACAATGACTGGAAGAGGAAGTTCGGAGAGGGTCTTGGGACAAGAGTTGTTGAATTGACCGGGAAACAACAACAGATCTGA

Network for GWHGAAZE005918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02889.17	Sec63	2	52	1.20E-12
PF02889.17	Sec63	52	142	1.20E-05
PF00270.30	DEAD	197	281	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12854	SNRNP200, BRR2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.062
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.035
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.053
	SRR8316901	Third green stage	0.085
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.030
	SRR8316903	Complete white stage	0.118
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.211
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.102
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.059
SRP132670	SRR6706286	Control	0.291
	SRR6706287	Light intensity 50%	0.188
	SRR6706288	Light intensity 20%	0.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.004
	CNS0095601	Golden flower (diploid) 1	0.311
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.035
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.102
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.093
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.038
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.036
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.113
	CRR073301	Leaf 2	0.144
	CRR073302	Leaf 3	0.115
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.170
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.266
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.035
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000