Detail information of GWHGAAZE005878


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP20440.10unnamed protein product [Coffea canephora]
Swissprottr|A1L4Y2|ADHL3_ARATH0Alcohol dehydrogenase-like 3
trEMBLtr|A0A068VHX2|A0A068VHX2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1205 {ECO:0000313|EMBL:CDP20440.1}
TAIR10AT1G32780.14E-149GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1545648615462706-
GWHAAZE00000002mRNA1545648615462706-
GWHAAZE00000002exon1545648615456596-
GWHAAZE00000002exon1545677115456932-
GWHAAZE00000002exon1545760015457709-
GWHAAZE00000002exon1545797215458037-
GWHAAZE00000002exon1546015715460246-
GWHAAZE00000002exon1546060715460935-
GWHAAZE00000002exon1546222715462276-
GWHAAZE00000002exon1546236015462496-
GWHAAZE00000002exon1546262515462706-
GWHAAZE00000002CDS1546262515462706-
GWHAAZE00000002CDS1546236015462496-
GWHAAZE00000002CDS1546222715462276-
GWHAAZE00000002CDS1546060715460935-
GWHAAZE00000002CDS1546015715460246-
GWHAAZE00000002CDS1545797215458037-
GWHAAZE00000002CDS1545760015457709-
GWHAAZE00000002CDS1545677115456932-
GWHAAZE00000002CDS1545648615456596-
Transcript Sequence

Network for GWHGAAZE005878

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N521802.40E-26
PF00107.27ADH_zinc_N2303265.60E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00001E1.1.1.1, adh Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.388
SRR3591706second leaf3.286
SRR3591707mature leaf2.451
SRR3591708Shoot apex0.922
SRR3591709Stem0.331
SRR3591710White floral bud2.358
SRR3591711White flower4.441
SRR3591712Green floral bud4.109
SRR3591713Yellow flower5.923
SRP173429 SRR8316895Juvenile bud stage 7.018
SRR8316896Juvenile bud stage 22.452
SRR8316897Juvenile bud stage 7.669
SRR8316894Third green stage 8.776
SRR8316900Third green stage 9.824
SRR8316901Third green stage 9.983
SRR8316898Complete white stage 2.492
SRR8316899Complete white stage 22.595
SRR8316903Complete white stage 3.743
SRR8316902Silver flowering stage3.130
SRR8316904Silver flowering stage3.621
SRR8316905Silver flowering stage1.829
SRR8316906Gold flowering stage 19.736
SRR8316907Gold flowering stage 4.631
SRR8316908Gold flowering stage 13.747
SRP132670SRR6706286Control16.802
SRR6706287Light intensity 50%12.584
SRR6706288Light intensity 20%8.719
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.485
CNS0095593Slightly white alabastrum(diploid) 29.482
CNS0095594Slightly white alabastrum(diploid) 312.040
CNS0095595Whole white alabastrum(diploid) 25.997
CNS0095596Whole white alabastrum(diploid) 30.677
CNS0095597Whole white alabastrum(diploid) 43.264
CNS0095598Silvery flower (diploied) 110.176
CNS0095599Silvery flower (diploied) 23.114
CNS0095600Silvery flower (diploied) 36.517
CNS0095601Golden flower (diploid) 111.381
CNS0095602Golden flower (diploid) 24.884
CNS0095603Golden flower (diploid) 35.430
CNS0095604Slightly white alabastrum(tetraploid) 11.487
CNS0095605Slightly white alabastrum(tetraploid) 21.260
CNS0095606Slightly white alabastrum(tetraploid) 35.996
CNS0095607Whole white alabastrum(tetraploid) 10.701
CNS0095608Whole white alabastrum(tetraploid) 21.124
CNS0095609Whole white alabastrum(tetraploid) 33.177
CNS0095610Silvery flower (tetraploid) 14.569
CNS0095611Silvery flower (tetraploid) 21.264
CNS0095612Silvery flower (tetraploid) 31.259
CNS0095613Golden flower (tetraploid) 18.524
CNS0095614Golden flower (tetraploid) 27.741
CNS0095615Golden flower (tetraploid) 31.292
CRA001975CRR073297Stem 14.498
CRR073298Stem 22.811
CRR073299Stem 34.710
CRR073300Leaf 13.575
CRR073301Leaf 23.461
CRR073302Leaf 33.285
CRR073303Juvenile bud 11.563
CRR073304Juvenile bud 20.899
CRR073305Juvenile bud 32.062
CRR073306Third green 11.545
CRR073307Third green 21.186
CRR073308Third green 31.267
CRR073309Second white 10.591
CRR073310Second white 20.513
CRR073311Second white 30.767
CRR073312Silver flowering 16.090
CRR073313Silver flowering 22.656
CRR073314Silver flowering 33.317
CRR073315Gold flowering 15.021
CRR073316Gold flowering 210.059
CRR073317Gold flowering 313.377
CRR073318Tawny withering 11.920
CRR073319Tawny withering 213.063
CRR073320Tawny withering 30.459