Gene detail

Detail information of GWHGAAZE005875

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010660239.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 [Vitis vinifera]
Swissprot	tr\|Q9ZSB5\|UBP10_ARATH	Ubiquitin carboxyl-terminal hydrolase 10
trEMBL	tr\|D7TVT0\|D7TVT0_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT4G10570.1	ubiquitin-specific protease 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15386582	15398376	-
GWHAAZE00000002	mRNA	15386582	15398376	-
GWHAAZE00000002	exon	15398225	15398376	-
GWHAAZE00000002	exon	15396798	15397046	-
GWHAAZE00000002	exon	15396187	15396328	-
GWHAAZE00000002	exon	15394523	15394582	-
GWHAAZE00000002	exon	15394276	15394371	-
GWHAAZE00000002	exon	15392231	15392629	-
GWHAAZE00000002	exon	15391987	15392127	-
GWHAAZE00000002	exon	15390610	15390780	-
GWHAAZE00000002	exon	15390170	15390427	-
GWHAAZE00000002	exon	15389961	15390097	-
GWHAAZE00000002	exon	15387316	15387876	-
GWHAAZE00000002	exon	15386953	15387229	-
GWHAAZE00000002	exon	15386582	15386746	-
GWHAAZE00000002	CDS	15398225	15398376	-
GWHAAZE00000002	CDS	15396798	15397046	-
GWHAAZE00000002	CDS	15396187	15396328	-
GWHAAZE00000002	CDS	15394523	15394582	-
GWHAAZE00000002	CDS	15394276	15394371	-
GWHAAZE00000002	CDS	15392231	15392629	-
GWHAAZE00000002	CDS	15391987	15392127	-
GWHAAZE00000002	CDS	15390610	15390780	-
GWHAAZE00000002	CDS	15390170	15390427	-
GWHAAZE00000002	CDS	15389961	15390097	-
GWHAAZE00000002	CDS	15387316	15387876	-
GWHAAZE00000002	CDS	15386953	15387229	-
GWHAAZE00000002	CDS	15386582	15386746	-

Transcript Sequence
>GWHTAAZE005883 ATGACTATTCCTGATTCTGGTTATATGATGGAGAATGAATCAATTGGCTTGCCGTGCACGCCAGAGGAAGAGAAGCGGATCATAGAGGAGTTAACAAGCGAAGCAGAGCCTAATATGAAGGAAGGGGACTTGTACTATGTCCTCTCCAACAGATGGTTCACAGAATGGCAAAAATATGTTGGGCAAGGCGTTGGGGCTTTTCAGTTTGACGACATTTCAACTGAATCTCAGCTTTTGGTATCATCAAAAACAGCGGATAGGCCTGGACCAATTGATAATACTAGCTTAGTCTCCACTGGAAGTGATTGCGAGGGTGATGATCTGCAGCTTCTCAGAACAATGGAAGAAGGCCAGGATTATGTTTTAGTCTGTCAAGAAGTTTGGAAAAAGCTATTTGAATGGTATAAGGGAGGACCTGCATTACCAAGGAAGGTAATTCCCGTGGGTGTTAACAAGAAGCTTGTCGTGGAGGTTTATCCTCTATGTCTTGAGTTGATTGATTCCAGGGACAAGAGCCAGTCAATCATTAGGATGAGTAAAAAGGCTTCTTTACATGGTCTTTATCAGAGGGTTTGTGCCGTGGGAGGGATAGATGCCGAAAAGGCACGTATCTGGGACTATTTCAATAATACAAAGCAAGTTGTGCTAGTTGATTCAAACAAAACCTTGGAAGAATCTAACTTGCAGATGGACCAACCTATTCTTCTAGAGGTGCAAGTTGATGGATTTTGGCCTTCTGGACATGGCATGGATTCAACTGGAAACGAGTTAGCGTTGGTACCTATGGAACCTGTAAGATCATCTGTGACAATCGCTGGAGGTCCATCTTTATCGAACGGTCATTCCACAGGTTATACATTAAGCCTGTATCAGGGAAGTACTTTAAATTCAACAATGACAGATATGGAGGATGGATATGACTCTTTGAGGTCTTCAACAAAAGGAGATAGGGGAGGTTTAGCAGGATTGCAGAATTTGGGAAATACTTGTTTTATGAATAGTGCCATTCAATGTTTAGTCCATACACCACCCCTGGTTGAGTACTTCTTGCAAGATTACACTGATGAGATCAACAGTCACAATCCTTTAGGGATGCACGGTGAGCTTGCACTTGCATTTGGTGAGTTGCTGAGGAAGCTCTGGTCCTCAGGTCGAACCGCCATTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGATTTGCACCCCAGTTTAGTGGATACAATCAACATGACTCTCAAGAACTCCTGGCCTTCTTATTGGATGGGTTGCATGAAGATTTGAATCGTGTTAAGCAAAAGCCTTACATTGAAACCAAAGATTGTGATGGTCGCCCCGACGAGGAAGTTGCAGATGAGTATTGGATGTATCACAAGGCCCGTAATGACTCAGTAATTGTGGATGTTTGCCAGGGTCAATACAAGTCAACATTGGTTTGCCCGGAGTGCAACAAAATTTCAATAACATTCGACCCCTTCATGTACTTGTCATTGCCTTTACCTTCAACAGTCACCCGTACAATGACGGTGACCGTGTTTTATGGGGACGGGACTGGTCTTCCAATGCCATACACAGTTAATGTCCTAAAACAGGGTTCAACCAAAGATCTAAGCATAGCTTTAAGTACTGCATGTTGCTTACGAAATGATGAAAGCTTGCTTCTTGCAGAGGTATGTGACCATGGGATAGTTCGATACTTGGAGACCCCTCTCGAACCCTTGTTGAAAATAAGAGATAATGAGCATATTGTCGCCTACAGGCTTCCCAAAATACAGGCAGATTCAACAAGACTAGAGATATGCCACAGTGTCATGCCTGAAAATCTGAAGGGAAGTGAGGGGAAGCCTTTCTTAACACCGTTGGTTACTTACATAGAAGACACACAAACTGGTGCTGATATAGATCTTGCAGTCAATAGAGTGCTATCTCCATTGAAAAGGAAAGCACTTCTTCCCCTGACCAAGTTAAACGGTTACGAGGAAAATGGCTCTGCTTCAGATACCACTGAAGAATCAACCAGCAACTGTGGGTCCCAACCTGAGACCAGGAAGCAGTCAATGGACTACTCAGACCTTGAAGAGATGTCCGGTAAAGACTTGTCTTTCCGGCTATGCATAGCAGATGATAGGGGCTCAAAATTCAAGCCAATTGCAAGGGATACACCCGTAAAACCGAGCAGTATTGTGAAGGTTATGCTGGGTTGGACCGATAGAGAGCAACAATTATACGATGCCAGCTACCTCAAGGATCTTCCCGAGGTGCACAAGATGGGGCCTATGGTGAAAAAAACCCGACAAGATTCAATCACTTTATTTCAATGCTTGGATGCATTCTTGAAGGAGGAACCATTAGGTCCCGATGACATGTGGTATTGCCCTCGTTGCAAAGAACATAGGCAAGCCACTAAGAAGTTAGATTTGTGGAGGTTGCCCGAGGTGGTTGTGTTTCACTTAAAACGATTCTCATACAGCCGATTCCTGAAGAACAAACTTGATACCTTTGTGAATTTCCCAATTTCAAATATTGATTTGAGCAAATACGTGAAAAGTAAAGACGCATCTGCAGGATCGCACATTTATGAGCTGTACGCCATTAGCAACCATTATGGTGGCCTTGGTGGCGGGCACTACTCTGCTTATGCCAAGTTGATTGATGAAAATAAATGGTATCATTTCGATGATGCTCACGTTTCACCTGTAAGTGAAGCTGACATCAAAACATCGGCAGCTTATGTGTTGTTCTACAAGAGAGTCAAATCTGAATCGAACGGAGTGATTGGAGAGTCATCCCAGGGTCATGGCAGTTCTTGA

Network for GWHGAAZE005875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06337.13	DUSP	42	146	7.60E-21
PF00443.30	UCH	322	914	1.40E-83

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity
GO:0004843	molecular_function	thiol-dependent ubiquitin-specific protease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.168
	SRR3591706	second leaf	24.576
	SRR3591707	mature leaf	24.400
	SRR3591708	Shoot apex	31.893
	SRR3591709	Stem	44.128
	SRR3591710	White floral bud	42.749
	SRR3591711	White flower	51.244
	SRR3591712	Green floral bud	41.381
	SRR3591713	Yellow flower	36.619
SRP173429	SRR8316895	Juvenile bud stage	19.642
	SRR8316896	Juvenile bud stage	25.481
	SRR8316897	Juvenile bud stage	13.408
	SRR8316894	Third green stage	12.024
	SRR8316900	Third green stage	33.488
	SRR8316901	Third green stage	31.023
	SRR8316898	Complete white stage	13.963
	SRR8316899	Complete white stage	45.000
	SRR8316903	Complete white stage	25.166
	SRR8316902	Silver flowering stage	14.392
	SRR8316904	Silver flowering stage	24.967
	SRR8316905	Silver flowering stage	10.147
	SRR8316906	Gold flowering stage	36.485
	SRR8316907	Gold flowering stage	31.878
	SRR8316908	Gold flowering stage	39.039
SRP132670	SRR6706286	Control	33.257
	SRR6706287	Light intensity 50%	36.891
	SRR6706288	Light intensity 20%	40.737
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.855
	CNS0095593	Slightly white alabastrum(diploid) 2	13.847
	CNS0095594	Slightly white alabastrum(diploid) 3	12.582
	CNS0095595	Whole white alabastrum(diploid) 2	15.289
	CNS0095596	Whole white alabastrum(diploid) 3	11.303
	CNS0095597	Whole white alabastrum(diploid) 4	13.922
	CNS0095598	Silvery flower (diploied) 1	22.808
	CNS0095599	Silvery flower (diploied) 2	16.968
	CNS0095600	Silvery flower (diploied) 3	41.711
	CNS0095601	Golden flower (diploid) 1	13.903
	CNS0095602	Golden flower (diploid) 2	37.116
	CNS0095603	Golden flower (diploid) 3	37.558
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.868
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.662
	CNS0095610	Silvery flower (tetraploid) 1	45.220
	CNS0095611	Silvery flower (tetraploid) 2	46.199
	CNS0095612	Silvery flower (tetraploid) 3	44.612
	CNS0095613	Golden flower (tetraploid) 1	19.895
	CNS0095614	Golden flower (tetraploid) 2	38.741
	CNS0095615	Golden flower (tetraploid) 3	30.825
CRA001975	CRR073297	Stem 1	35.554
	CRR073298	Stem 2	33.857
	CRR073299	Stem 3	31.299
	CRR073300	Leaf 1	37.675
	CRR073301	Leaf 2	33.975
	CRR073302	Leaf 3	30.409
	CRR073303	Juvenile bud 1	33.159
	CRR073304	Juvenile bud 2	26.613
	CRR073305	Juvenile bud 3	43.486
	CRR073306	Third green 1	16.075
	CRR073307	Third green 2	13.606
	CRR073308	Third green 3	15.875
	CRR073309	Second white 1	21.175
	CRR073310	Second white 2	23.494
	CRR073311	Second white 3	22.811
	CRR073312	Silver flowering 1	16.989
	CRR073313	Silver flowering 2	21.330
	CRR073314	Silver flowering 3	13.669
	CRR073315	Gold flowering 1	18.112
	CRR073316	Gold flowering 2	23.948
	CRR073317	Gold flowering 3	17.957
	CRR073318	Tawny withering 1	28.224
	CRR073319	Tawny withering 2	18.800
	CRR073320	Tawny withering 3	25.106