Detail information of GWHGAAZE005866


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081361.10PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic [Sesamum indicum]
Swissprottr|O82627|SSG1_ANTMA0Granule-bound starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|M9Q2A3|M9Q2A3_TOBAC0Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}
TAIR10AT1G32900.10UDP-Glycosyltransferase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1524734115251722-
GWHAAZE00000002mRNA1524734115251722-
GWHAAZE00000002exon1524734115247457-
GWHAAZE00000002exon1524802815248156-
GWHAAZE00000002exon1524824415248330-
GWHAAZE00000002exon1524843015248621-
GWHAAZE00000002exon1524873715248913-
GWHAAZE00000002exon1524931515249558-
GWHAAZE00000002exon1524965715249766-
GWHAAZE00000002exon1524987215249972-
GWHAAZE00000002exon1525007015250133-
GWHAAZE00000002exon1525078415250873-
GWHAAZE00000002exon1525098315251081-
GWHAAZE00000002exon1525117815251258-
GWHAAZE00000002exon1525136915251722-
GWHAAZE00000002CDS1525136915251722-
GWHAAZE00000002CDS1525117815251258-
GWHAAZE00000002CDS1525098315251081-
GWHAAZE00000002CDS1525078415250873-
GWHAAZE00000002CDS1525007015250133-
GWHAAZE00000002CDS1524987215249972-
GWHAAZE00000002CDS1524965715249766-
GWHAAZE00000002CDS1524931515249558-
GWHAAZE00000002CDS1524873715248913-
GWHAAZE00000002CDS1524843015248621-
GWHAAZE00000002CDS1524824415248330-
GWHAAZE00000002CDS1524802815248156-
GWHAAZE00000002CDS1524734115247457-
Transcript Sequence

Network for GWHGAAZE005866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08323.12Glyco_transf_5913505.80E-74
PF00534.21Glycos_transf_14065251.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13679WAXY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0004373molecular_functionglycogen (starch) synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf192.927
SRR3591706second leaf84.471
SRR3591707mature leaf112.629
SRR3591708Shoot apex101.525
SRR3591709Stem314.843
SRR3591710White floral bud137.115
SRR3591711White flower64.700
SRR3591712Green floral bud301.568
SRR3591713Yellow flower44.739
SRP173429 SRR8316895Juvenile bud stage 276.114
SRR8316896Juvenile bud stage 348.197
SRR8316897Juvenile bud stage 213.690
SRR8316894Third green stage 203.188
SRR8316900Third green stage 584.075
SRR8316901Third green stage 452.147
SRR8316898Complete white stage 119.309
SRR8316899Complete white stage 769.635
SRR8316903Complete white stage 155.239
SRR8316902Silver flowering stage50.140
SRR8316904Silver flowering stage52.079
SRR8316905Silver flowering stage21.363
SRR8316906Gold flowering stage 65.599
SRR8316907Gold flowering stage 92.614
SRR8316908Gold flowering stage 66.477
SRP132670SRR6706286Control345.105
SRR6706287Light intensity 50%447.822
SRR6706288Light intensity 20%518.549
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1170.534
CNS0095593Slightly white alabastrum(diploid) 2187.139
CNS0095594Slightly white alabastrum(diploid) 3154.308
CNS0095595Whole white alabastrum(diploid) 2176.801
CNS0095596Whole white alabastrum(diploid) 3154.102
CNS0095597Whole white alabastrum(diploid) 4156.320
CNS0095598Silvery flower (diploied) 170.591
CNS0095599Silvery flower (diploied) 2101.069
CNS0095600Silvery flower (diploied) 384.057
CNS0095601Golden flower (diploid) 184.080
CNS0095602Golden flower (diploid) 266.493
CNS0095603Golden flower (diploid) 369.764
CNS0095604Slightly white alabastrum(tetraploid) 1237.913
CNS0095605Slightly white alabastrum(tetraploid) 2173.441
CNS0095606Slightly white alabastrum(tetraploid) 3414.866
CNS0095607Whole white alabastrum(tetraploid) 1114.065
CNS0095608Whole white alabastrum(tetraploid) 296.002
CNS0095609Whole white alabastrum(tetraploid) 3254.181
CNS0095610Silvery flower (tetraploid) 1111.199
CNS0095611Silvery flower (tetraploid) 2131.282
CNS0095612Silvery flower (tetraploid) 391.964
CNS0095613Golden flower (tetraploid) 116.061
CNS0095614Golden flower (tetraploid) 2179.544
CNS0095615Golden flower (tetraploid) 317.289
CRA001975CRR073297Stem 1174.275
CRR073298Stem 2150.879
CRR073299Stem 3186.187
CRR073300Leaf 1195.659
CRR073301Leaf 2175.879
CRR073302Leaf 3255.272
CRR073303Juvenile bud 1242.505
CRR073304Juvenile bud 2199.112
CRR073305Juvenile bud 3378.866
CRR073306Third green 148.296
CRR073307Third green 229.465
CRR073308Third green 334.685
CRR073309Second white 135.851
CRR073310Second white 225.862
CRR073311Second white 322.913
CRR073312Silver flowering 19.719
CRR073313Silver flowering 211.468
CRR073314Silver flowering 39.157
CRR073315Gold flowering 1169.685
CRR073316Gold flowering 2196.376
CRR073317Gold flowering 3170.831
CRR073318Tawny withering 150.727
CRR073319Tawny withering 241.675
CRR073320Tawny withering 361.429