Detail information of GWHGAAZE005851


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010660457.10PREDICTED: nuclear pore complex protein NUP98A [Vitis vinifera]
Swissprottr|Q8RY25|NU98A_ARATH0Nuclear pore complex protein NUP98A {ECO:0000303|PubMed:21189294}
trEMBLtr|A9ZP15|A9ZP15_DAUCA0Nucleoporin 98 {ECO:0000313|EMBL:BAF98996.1}
TAIR10AT1G10390.26E-44Nucleoporin autopeptidase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1492722714932718-
GWHAAZE00000002mRNA1492722714932718-
GWHAAZE00000002exon1493270014932718-
GWHAAZE00000002exon1493153214931834-
GWHAAZE00000002exon1492839814929012-
GWHAAZE00000002exon1492799014928220-
GWHAAZE00000002exon1492722714927900-
GWHAAZE00000002CDS1493270014932718-
GWHAAZE00000002CDS1493153214931834-
GWHAAZE00000002CDS1492839814929012-
GWHAAZE00000002CDS1492799014928220-
GWHAAZE00000002CDS1492722714927900-
Transcript Sequence

Network for GWHGAAZE005851

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14297NUP98, ADAR2, NUP116 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.811
SRR3591706second leaf19.427
SRR3591707mature leaf22.076
SRR3591708Shoot apex21.292
SRR3591709Stem29.431
SRR3591710White floral bud40.360
SRR3591711White flower43.238
SRR3591712Green floral bud35.949
SRR3591713Yellow flower28.276
SRP173429 SRR8316895Juvenile bud stage 13.362
SRR8316896Juvenile bud stage 18.000
SRR8316897Juvenile bud stage 9.786
SRR8316894Third green stage 8.602
SRR8316900Third green stage 23.133
SRR8316901Third green stage 20.150
SRR8316898Complete white stage 5.690
SRR8316899Complete white stage 19.585
SRR8316903Complete white stage 17.394
SRR8316902Silver flowering stage11.847
SRR8316904Silver flowering stage18.483
SRR8316905Silver flowering stage6.958
SRR8316906Gold flowering stage 20.528
SRR8316907Gold flowering stage 21.402
SRR8316908Gold flowering stage 22.996
SRP132670SRR6706286Control41.131
SRR6706287Light intensity 50%39.230
SRR6706288Light intensity 20%38.632
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.450
CNS0095593Slightly white alabastrum(diploid) 29.479
CNS0095594Slightly white alabastrum(diploid) 39.174
CNS0095595Whole white alabastrum(diploid) 216.662
CNS0095596Whole white alabastrum(diploid) 316.160
CNS0095597Whole white alabastrum(diploid) 418.151
CNS0095598Silvery flower (diploied) 117.932
CNS0095599Silvery flower (diploied) 215.359
CNS0095600Silvery flower (diploied) 334.431
CNS0095601Golden flower (diploid) 112.664
CNS0095602Golden flower (diploid) 237.287
CNS0095603Golden flower (diploid) 332.924
CNS0095604Slightly white alabastrum(tetraploid) 119.691
CNS0095605Slightly white alabastrum(tetraploid) 213.620
CNS0095606Slightly white alabastrum(tetraploid) 332.002
CNS0095607Whole white alabastrum(tetraploid) 120.853
CNS0095608Whole white alabastrum(tetraploid) 219.189
CNS0095609Whole white alabastrum(tetraploid) 330.387
CNS0095610Silvery flower (tetraploid) 130.789
CNS0095611Silvery flower (tetraploid) 238.262
CNS0095612Silvery flower (tetraploid) 329.047
CNS0095613Golden flower (tetraploid) 116.214
CNS0095614Golden flower (tetraploid) 228.512
CNS0095615Golden flower (tetraploid) 339.283
CRA001975CRR073297Stem 139.337
CRR073298Stem 234.885
CRR073299Stem 332.382
CRR073300Leaf 145.611
CRR073301Leaf 242.359
CRR073302Leaf 327.878
CRR073303Juvenile bud 130.729
CRR073304Juvenile bud 220.980
CRR073305Juvenile bud 347.435
CRR073306Third green 122.098
CRR073307Third green 214.860
CRR073308Third green 323.113
CRR073309Second white 119.331
CRR073310Second white 222.053
CRR073311Second white 329.769
CRR073312Silver flowering 127.011
CRR073313Silver flowering 231.780
CRR073314Silver flowering 327.113
CRR073315Gold flowering 118.675
CRR073316Gold flowering 228.672
CRR073317Gold flowering 323.101
CRR073318Tawny withering 126.206
CRR073319Tawny withering 217.516
CRR073320Tawny withering 326.388