Gene detail

Detail information of GWHGAAZE005830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081342.1	2.4786E-149	PREDICTED: probable receptor-like protein kinase At1g33260 [Sesamum indicum]
Swissprot	tr\|Q9SV83\|Y4103_ARATH	3E-105	Probable receptor-like protein kinase At4g10390
trEMBL	tr\|A0A061G3K5\|A0A061G3K5_THECC	1E-131	LRR receptor-like serine/threonine-protein kinase, putative {ECO:0000313\|EMBL:EOY23762.1}
TAIR10	AT4G10390.1	7E-87	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14615790	14617425	-
GWHAAZE00000002	mRNA	14615790	14617425	-
GWHAAZE00000002	exon	14615790	14616502	-
GWHAAZE00000002	exon	14617068	14617425	-
GWHAAZE00000002	CDS	14617068	14617425	-
GWHAAZE00000002	CDS	14615790	14616502	-

Transcript Sequence
>GWHTAAZE005838 ATGGCTTTTCTCAAGTTTTTAAGATTCAGGATTAGGCGAAAGCAAGTGTCCGATAGAGTTGTTGCGGTTGTTCCGCACGGTTATAACGATGACGGCGTGAAGGATGGGTGTGGTGTGGGGAGGGTGGGCTGGGAGGAGATACAGAGGGTCACTTCGAATTTTTCAATGTCTCGGGTTATCGGGTCGGGTGGCTTTAGCACCGTGTATCTCGCCCAATTCCCGGATTGTTCGTACAGGGCAGTCAAGATCCAATGCAGTAGTGAGCGGCTCAACAAAGTTTACAAGCAGGAGCTCCAGATCTTGCTCAGTCTTTGTCATCAAAATATCGTCAAACTTCTCGGCTATTGCGATGATCGAGAAGAAGGGGTGCTTGTATTTGAGTATGTCCCAAATGGAACATTGCAAGAGATGCTCCACGGCAGCACTAGCATAGCAACAGCGGCAAAAGCGTTGGTGCTGCCATGGAAAAGCCGCATGGCAATAGCATTCCAACTAGCCCAAGCAATCGAATACCTCCACGAAAAGTGCAGCCTTCACATAGTCCACGGAGACATCAAAGCTTCAAACATACTGCTCGATGAAAACCTTAATTGCAAACTTTGTGATTTCGGGTCCGCAAAAATGGGGTTTTCTTCGACAGTTTTACCACCATTGTCATCGACAATGAGTCGAATGATAATGGGTTCTCAAGGCTACCTTGATCCTCACTTTCTTAAGACTGGAATTGCGTCTAAAAAGAATGACATTTACAGTTTTGGTGTTATAGTTCTTGAACTGATCACTGGGAAAGAAGCTTTCTGTTCGAAAACTGGAGAGAAGCTGACATTGAAGGCGGCTCCTTTGCTGAATGATGCTGCCAAGATTGACAAATTGGTGGATTTGAGGCTTAATGGGGATTTTGACTTGGAAGAGGCAAAGGCCATGGCTTCTATTTCGGCAAAGTGCCTTAGCAATTCACCTAGTCTAAGGGTTTCCGCATCTGGTATATTAACCACTATGAGAGAGAACATTCCTTCAATCTCGTTCTTGAAAGATGAAAGATTTGATGAATTATCTGCTTGTACAAAATGA

Network for GWHGAAZE005830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	56	330	3.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XIII

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.980
	SRR3591706	second leaf	3.603
	SRR3591707	mature leaf	2.850
	SRR3591708	Shoot apex	6.633
	SRR3591709	Stem	18.094
	SRR3591710	White floral bud	16.126
	SRR3591711	White flower	12.967
	SRR3591712	Green floral bud	11.187
	SRR3591713	Yellow flower	12.480
SRP173429	SRR8316895	Juvenile bud stage	2.031
	SRR8316896	Juvenile bud stage	3.594
	SRR8316897	Juvenile bud stage	2.365
	SRR8316894	Third green stage	1.182
	SRR8316900	Third green stage	3.986
	SRR8316901	Third green stage	4.850
	SRR8316898	Complete white stage	6.659
	SRR8316899	Complete white stage	9.812
	SRR8316903	Complete white stage	12.071
	SRR8316902	Silver flowering stage	5.507
	SRR8316904	Silver flowering stage	6.269
	SRR8316905	Silver flowering stage	2.181
	SRR8316906	Gold flowering stage	9.582
	SRR8316907	Gold flowering stage	6.550
	SRR8316908	Gold flowering stage	10.638
SRP132670	SRR6706286	Control	3.443
	SRR6706287	Light intensity 50%	4.440
	SRR6706288	Light intensity 20%	3.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.037
	CNS0095593	Slightly white alabastrum(diploid) 2	2.560
	CNS0095594	Slightly white alabastrum(diploid) 3	1.814
	CNS0095595	Whole white alabastrum(diploid) 2	1.903
	CNS0095596	Whole white alabastrum(diploid) 3	1.324
	CNS0095597	Whole white alabastrum(diploid) 4	2.918
	CNS0095598	Silvery flower (diploied) 1	2.818
	CNS0095599	Silvery flower (diploied) 2	5.290
	CNS0095600	Silvery flower (diploied) 3	7.228
	CNS0095601	Golden flower (diploid) 1	3.316
	CNS0095602	Golden flower (diploid) 2	4.343
	CNS0095603	Golden flower (diploid) 3	4.711
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.627
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.942
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.503
	CNS0095610	Silvery flower (tetraploid) 1	4.722
	CNS0095611	Silvery flower (tetraploid) 2	4.380
	CNS0095612	Silvery flower (tetraploid) 3	5.976
	CNS0095613	Golden flower (tetraploid) 1	2.356
	CNS0095614	Golden flower (tetraploid) 2	4.111
	CNS0095615	Golden flower (tetraploid) 3	2.761
CRA001975	CRR073297	Stem 1	3.326
	CRR073298	Stem 2	3.192
	CRR073299	Stem 3	2.531
	CRR073300	Leaf 1	6.618
	CRR073301	Leaf 2	4.134
	CRR073302	Leaf 3	4.759
	CRR073303	Juvenile bud 1	6.185
	CRR073304	Juvenile bud 2	14.373
	CRR073305	Juvenile bud 3	7.397
	CRR073306	Third green 1	17.676
	CRR073307	Third green 2	12.810
	CRR073308	Third green 3	13.721
	CRR073309	Second white 1	9.111
	CRR073310	Second white 2	7.076
	CRR073311	Second white 3	4.939
	CRR073312	Silver flowering 1	4.784
	CRR073313	Silver flowering 2	1.242
	CRR073314	Silver flowering 3	1.526
	CRR073315	Gold flowering 1	0.463
	CRR073316	Gold flowering 2	1.431
	CRR073317	Gold flowering 3	1.413
	CRR073318	Tawny withering 1	9.904
	CRR073319	Tawny withering 2	11.748
	CRR073320	Tawny withering 3	10.922