Detail information of GWHGAAZE005816


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281777.14.97667E-61PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera]
Swissprottr|Q9SJF3|DCP1_ARATH2E-22mRNA-decapping enzyme-like protein
trEMBLtr|D7TJB2|D7TJB2_VITVI2E-61Putative uncharacterized protein {ECO:0000313|EMBL:CBI30338.3}
TAIR10AT1G08370.11E-10decapping 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1435644814361591+
GWHAAZE00000002mRNA1435644814361591+
GWHAAZE00000002exon1435644814356452+
GWHAAZE00000002exon1435652314356579+
GWHAAZE00000002exon1435750314357583+
GWHAAZE00000002exon1435834814358471+
GWHAAZE00000002exon1435898714359469+
GWHAAZE00000002exon1436153514361591+
GWHAAZE00000002CDS1435644814356452+
GWHAAZE00000002CDS1435652314356579+
GWHAAZE00000002CDS1435750314357583+
GWHAAZE00000002CDS1435834814358471+
GWHAAZE00000002CDS1435898714359469+
GWHAAZE00000002CDS1436153514361591+
Transcript Sequence

Network for GWHGAAZE005816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12611DCP1B RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.462
SRR3591706second leaf23.728
SRR3591707mature leaf17.849
SRR3591708Shoot apex43.365
SRR3591709Stem42.748
SRR3591710White floral bud31.782
SRR3591711White flower32.361
SRR3591712Green floral bud39.160
SRR3591713Yellow flower26.020
SRP173429 SRR8316895Juvenile bud stage 16.918
SRR8316896Juvenile bud stage 21.990
SRR8316897Juvenile bud stage 11.789
SRR8316894Third green stage 9.397
SRR8316900Third green stage 28.487
SRR8316901Third green stage 25.454
SRR8316898Complete white stage 8.328
SRR8316899Complete white stage 26.883
SRR8316903Complete white stage 17.285
SRR8316902Silver flowering stage7.890
SRR8316904Silver flowering stage12.206
SRR8316905Silver flowering stage4.948
SRR8316906Gold flowering stage 14.894
SRR8316907Gold flowering stage 15.087
SRR8316908Gold flowering stage 14.666
SRP132670SRR6706286Control15.898
SRR6706287Light intensity 50%18.094
SRR6706288Light intensity 20%16.955
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.350
CNS0095593Slightly white alabastrum(diploid) 222.870
CNS0095594Slightly white alabastrum(diploid) 319.304
CNS0095595Whole white alabastrum(diploid) 216.851
CNS0095596Whole white alabastrum(diploid) 317.176
CNS0095597Whole white alabastrum(diploid) 421.009
CNS0095598Silvery flower (diploied) 119.096
CNS0095599Silvery flower (diploied) 216.672
CNS0095600Silvery flower (diploied) 321.435
CNS0095601Golden flower (diploid) 119.175
CNS0095602Golden flower (diploid) 222.270
CNS0095603Golden flower (diploid) 321.589
CNS0095604Slightly white alabastrum(tetraploid) 126.614
CNS0095605Slightly white alabastrum(tetraploid) 221.731
CNS0095606Slightly white alabastrum(tetraploid) 330.022
CNS0095607Whole white alabastrum(tetraploid) 115.712
CNS0095608Whole white alabastrum(tetraploid) 213.206
CNS0095609Whole white alabastrum(tetraploid) 321.282
CNS0095610Silvery flower (tetraploid) 121.873
CNS0095611Silvery flower (tetraploid) 223.420
CNS0095612Silvery flower (tetraploid) 318.884
CNS0095613Golden flower (tetraploid) 116.060
CNS0095614Golden flower (tetraploid) 218.679
CNS0095615Golden flower (tetraploid) 315.927
CRA001975CRR073297Stem 152.721
CRR073298Stem 250.561
CRR073299Stem 341.559
CRR073300Leaf 150.619
CRR073301Leaf 254.346
CRR073302Leaf 331.520
CRR073303Juvenile bud 128.325
CRR073304Juvenile bud 231.900
CRR073305Juvenile bud 353.307
CRR073306Third green 19.271
CRR073307Third green 211.567
CRR073308Third green 312.378
CRR073309Second white 117.517
CRR073310Second white 212.861
CRR073311Second white 318.140
CRR073312Silver flowering 112.406
CRR073313Silver flowering 213.971
CRR073314Silver flowering 315.724
CRR073315Gold flowering 115.283
CRR073316Gold flowering 226.771
CRR073317Gold flowering 323.269
CRR073318Tawny withering 137.688
CRR073319Tawny withering 233.395
CRR073320Tawny withering 334.945