Detail information of GWHGAAZE005810


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006341082.10PREDICTED: sorting nexin 1-like [Solanum tuberosum]
Swissprottr|Q9FG38|SNX1_ARATH0Sorting nexin 1
trEMBLtr|A0A068VHP0|A0A068VHP0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_913 {ECO:0000313|EMBL:CDP20109.1}
TAIR10AT5G06140.11E-179sorting nexin 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1419983714208940-
GWHAAZE00000002mRNA1419983714208940-
GWHAAZE00000002exon1420879714208940-
GWHAAZE00000002exon1420756214207697-
GWHAAZE00000002exon1420666414206797-
GWHAAZE00000002exon1420576214205836-
GWHAAZE00000002exon1420368014203839-
GWHAAZE00000002exon1420342114203554-
GWHAAZE00000002exon1420324214203310-
GWHAAZE00000002exon1420047814200557-
GWHAAZE00000002exon1420023214200292-
GWHAAZE00000002exon1419983714200055-
GWHAAZE00000002CDS1420879714208940-
GWHAAZE00000002CDS1420756214207697-
GWHAAZE00000002CDS1420666414206797-
GWHAAZE00000002CDS1420576214205836-
GWHAAZE00000002CDS1420368014203839-
GWHAAZE00000002CDS1420342114203554-
GWHAAZE00000002CDS1420324214203310-
GWHAAZE00000002CDS1420047814200557-
GWHAAZE00000002CDS1420023214200292-
GWHAAZE00000002CDS1419983714200055-
Transcript Sequence

Network for GWHGAAZE005810

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00787.25PX571351.40E-20
PF09325.11Vps51773922.70E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17917SNX1_2 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0035091molecular_functionphosphatidylinositol binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.113
SRR3591706second leaf30.366
SRR3591707mature leaf27.910
SRR3591708Shoot apex49.632
SRR3591709Stem44.833
SRR3591710White floral bud49.507
SRR3591711White flower57.056
SRR3591712Green floral bud39.948
SRR3591713Yellow flower46.840
SRP173429 SRR8316895Juvenile bud stage 29.585
SRR8316896Juvenile bud stage 38.672
SRR8316897Juvenile bud stage 18.938
SRR8316894Third green stage 17.679
SRR8316900Third green stage 52.064
SRR8316901Third green stage 41.498
SRR8316898Complete white stage 20.042
SRR8316899Complete white stage 56.255
SRR8316903Complete white stage 33.327
SRR8316902Silver flowering stage20.576
SRR8316904Silver flowering stage26.612
SRR8316905Silver flowering stage15.077
SRR8316906Gold flowering stage 43.334
SRR8316907Gold flowering stage 43.066
SRR8316908Gold flowering stage 47.889
SRP132670SRR6706286Control26.798
SRR6706287Light intensity 50%33.391
SRR6706288Light intensity 20%33.698
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.505
CNS0095593Slightly white alabastrum(diploid) 225.753
CNS0095594Slightly white alabastrum(diploid) 325.068
CNS0095595Whole white alabastrum(diploid) 223.748
CNS0095596Whole white alabastrum(diploid) 321.349
CNS0095597Whole white alabastrum(diploid) 422.353
CNS0095598Silvery flower (diploied) 125.749
CNS0095599Silvery flower (diploied) 222.095
CNS0095600Silvery flower (diploied) 340.172
CNS0095601Golden flower (diploid) 124.862
CNS0095602Golden flower (diploid) 234.293
CNS0095603Golden flower (diploid) 336.995
CNS0095604Slightly white alabastrum(tetraploid) 129.862
CNS0095605Slightly white alabastrum(tetraploid) 228.363
CNS0095606Slightly white alabastrum(tetraploid) 344.748
CNS0095607Whole white alabastrum(tetraploid) 117.911
CNS0095608Whole white alabastrum(tetraploid) 216.664
CNS0095609Whole white alabastrum(tetraploid) 333.116
CNS0095610Silvery flower (tetraploid) 143.855
CNS0095611Silvery flower (tetraploid) 250.646
CNS0095612Silvery flower (tetraploid) 336.577
CNS0095613Golden flower (tetraploid) 130.150
CNS0095614Golden flower (tetraploid) 233.785
CNS0095615Golden flower (tetraploid) 332.390
CRA001975CRR073297Stem 138.857
CRR073298Stem 237.033
CRR073299Stem 342.047
CRR073300Leaf 139.130
CRR073301Leaf 238.291
CRR073302Leaf 340.646
CRR073303Juvenile bud 144.110
CRR073304Juvenile bud 235.247
CRR073305Juvenile bud 346.530
CRR073306Third green 125.545
CRR073307Third green 227.180
CRR073308Third green 325.944
CRR073309Second white 125.561
CRR073310Second white 226.944
CRR073311Second white 324.542
CRR073312Silver flowering 122.566
CRR073313Silver flowering 219.230
CRR073314Silver flowering 320.456
CRR073315Gold flowering 122.699
CRR073316Gold flowering 223.483
CRR073317Gold flowering 319.806
CRR073318Tawny withering 132.450
CRR073319Tawny withering 226.614
CRR073320Tawny withering 334.671