Detail information of GWHGAAZE005804


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004966226.11.3351E-85PREDICTED: 40S ribosomal protein S14-like isoform X3 [Setaria italica]
Swissprottr|P19950|RS141_MAIZE8E-8340S ribosomal protein S14
trEMBLtr|K7VW88|K7VW88_MAIZE2E-84Uncharacterized protein {ECO:0000313|EMBL:AFW87287.1, ECO:0000313|EnsemblPlants:GRMZM5G805627_P01}
TAIR10AT3G52580.12E-55Ribosomal protein S11 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1413123314132837-
GWHAAZE00000002mRNA1413123314132837-
GWHAAZE00000002exon1413123314131388-
GWHAAZE00000002exon1413147614131561-
GWHAAZE00000002exon1413257314132618-
GWHAAZE00000002exon1413269714132837-
GWHAAZE00000002CDS1413269714132837-
GWHAAZE00000002CDS1413257314132618-
GWHAAZE00000002CDS1413147614131561-
GWHAAZE00000002CDS1413123314131388-
Transcript Sequence

Network for GWHGAAZE005804

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00411.20Ribosomal_S11341344.70E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02955RP-S14e, RPS14 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf288.506
SRR3591706second leaf123.625
SRR3591707mature leaf86.105
SRR3591708Shoot apex384.392
SRR3591709Stem189.018
SRR3591710White floral bud111.445
SRR3591711White flower99.376
SRR3591712Green floral bud215.389
SRR3591713Yellow flower73.178
SRP173429 SRR8316895Juvenile bud stage 131.558
SRR8316896Juvenile bud stage 193.568
SRR8316897Juvenile bud stage 101.727
SRR8316894Third green stage 73.257
SRR8316900Third green stage 242.604
SRR8316901Third green stage 251.512
SRR8316898Complete white stage 53.122
SRR8316899Complete white stage 242.662
SRR8316903Complete white stage 74.596
SRR8316902Silver flowering stage42.369
SRR8316904Silver flowering stage44.879
SRR8316905Silver flowering stage22.788
SRR8316906Gold flowering stage 75.440
SRR8316907Gold flowering stage 62.966
SRR8316908Gold flowering stage 103.084
SRP132670SRR6706286Control256.586
SRR6706287Light intensity 50%252.150
SRR6706288Light intensity 20%279.237
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1234.283
CNS0095593Slightly white alabastrum(diploid) 2298.812
CNS0095594Slightly white alabastrum(diploid) 3211.013
CNS0095595Whole white alabastrum(diploid) 2197.573
CNS0095596Whole white alabastrum(diploid) 3225.086
CNS0095597Whole white alabastrum(diploid) 4167.652
CNS0095598Silvery flower (diploied) 1142.848
CNS0095599Silvery flower (diploied) 2122.459
CNS0095600Silvery flower (diploied) 397.748
CNS0095601Golden flower (diploid) 1104.753
CNS0095602Golden flower (diploid) 282.830
CNS0095603Golden flower (diploid) 381.944
CNS0095604Slightly white alabastrum(tetraploid) 1228.016
CNS0095605Slightly white alabastrum(tetraploid) 2222.360
CNS0095606Slightly white alabastrum(tetraploid) 3298.148
CNS0095607Whole white alabastrum(tetraploid) 1141.183
CNS0095608Whole white alabastrum(tetraploid) 2163.752
CNS0095609Whole white alabastrum(tetraploid) 3223.401
CNS0095610Silvery flower (tetraploid) 1103.834
CNS0095611Silvery flower (tetraploid) 295.045
CNS0095612Silvery flower (tetraploid) 367.610
CNS0095613Golden flower (tetraploid) 162.563
CNS0095614Golden flower (tetraploid) 287.705
CNS0095615Golden flower (tetraploid) 351.667
CRA001975CRR073297Stem 1217.460
CRR073298Stem 2197.282
CRR073299Stem 3240.457
CRR073300Leaf 1231.902
CRR073301Leaf 2242.981
CRR073302Leaf 3288.663
CRR073303Juvenile bud 1246.051
CRR073304Juvenile bud 2196.888
CRR073305Juvenile bud 3202.325
CRR073306Third green 134.617
CRR073307Third green 236.230
CRR073308Third green 336.313
CRR073309Second white 129.911
CRR073310Second white 224.920
CRR073311Second white 314.583
CRR073312Silver flowering 111.485
CRR073313Silver flowering 219.485
CRR073314Silver flowering 319.327
CRR073315Gold flowering 1112.716
CRR073316Gold flowering 2128.207
CRR073317Gold flowering 395.923
CRR073318Tawny withering 1223.424
CRR073319Tawny withering 2210.085
CRR073320Tawny withering 3238.913