Gene detail

Detail information of GWHGAAZE005799

Functional Annotation

Database	Orthologs	Annotation
Nr	CAA49162.1	beta-fructofuranosidase [Daucus carota]
Swissprot	tr\|P26792\|INV1_DAUCA	Beta-fructofuranosidase, insoluble isoenzyme 1 (Precursor)
trEMBL	tr\|A0A067FSV9\|A0A067FSV9_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO70479.1}
TAIR10	AT3G52600.1	cell wall invertase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14041693	14044305	+
GWHAAZE00000002	mRNA	14041693	14044305	+
GWHAAZE00000002	exon	14041693	14042568	+
GWHAAZE00000002	exon	14042866	14043024	+
GWHAAZE00000002	exon	14043141	14043385	+
GWHAAZE00000002	exon	14043833	14043884	+
GWHAAZE00000002	exon	14044024	14044305	+
GWHAAZE00000002	CDS	14041693	14042568	+
GWHAAZE00000002	CDS	14042866	14043024	+
GWHAAZE00000002	CDS	14043141	14043385	+
GWHAAZE00000002	CDS	14043833	14043884	+
GWHAAZE00000002	CDS	14044024	14044203	+
GWHAAZE00000002	three_prime_UTR	14044204	14044305	+

Transcript Sequence
>GWHTAAZE005807 ATGTTAACAGGACCAATGTATTATGAAGGAATATACCATTTTTTCTACCAGTACAATCCCAATGGTGCTGTGTGGGGCAACATTGTGTGGGCCCACTCTGTATCAACAGACATGATCAATTGGACGCCATTAGAACCAGCAATTTACCCATCCAAGCCCTTCGACAAATATGGATGCTGGTCCGGGTCCGTCACTATCCTACCAGGCAACAAACCGGTCATACTCTACACCGGAATAACTGACCCAAAACCTGCCCCGGGAACGCAGGTCCAGAACTATGCAATACCCGCCAACTATTCGGATCCGTACCTAAGGGAATGGGTGAAACCTGACGACAACCCATTGGTGCCACCTACCCATGGCGAGAACATATCCGCTTTCCGGGACCCAACAACTGCATGGTTCAAAGATGGGTACTGGAGAATGGTGGTGGGTAGCAAGAGGAAACAGATAGGAGTTGTATACTTGTATCGAAGTAAGGATTTTAAGCATTGGAAAAAAGCTAAACAACCCTTACACAGCAAGTCGGATACCGGAATGTGGGAATGCCCAGATTTTTACCCTGTGTCGACCCATGCTCCACACGGGTTGGAGACTTCGGTAATGGGCGAAAACGTGAAGCATGTATTAAAGGTTAGCCTTGATGTTACTAGGTATGAATATTATACAATTGGAACGTATTTTCCTAAAATTGATAAGTACGTACCAGACAAAGATTCCATTGATGGATGGGCCGGGTTGAGGTATGATTATGGCAATTTTTATGCGTCCAAGACCTTTTTTGATAATGGCAAGAGTCGGAGGATCTTGTGGGGTTGGACTAATGAATCTGATACAACTGAGGATGATGTTGCAAAAGGATGGGCTGGAATTCAGGCAATTCCACGTTCGGTTTGGCTTGCACACGGTGGCAAACAATTAGTACAATGGCCAATTGAAGAATTGGAAACTTTGAGAGGGAAAAAGGTGCATCTAAGCAATGTGAAGCTGGATATTGGACAACATGTTGAAATTAAAGGAATAACAGCAGCACAGGCTGATGTTGATGTGACCTTTTCGTTCAAGAGCTTGGAGAAAGCGGAGGCATATGATCTTAAGTGGGACAAAATTGATGCACAAGCGCTTTGCAGCAAGAAGGGTTCAACAGTTGTAGGCGGAGTTGGTCCGTTTGGGCTCTTGACATTGGCTTCCAAAAAACTGGAAGAATACACTCCAGTGTTCTTCAGAATTTTTAAGACTAAAGACAACTATAAAGTTTTAATGTGCTCTGATGCTACCAGCTCCTCCCTATCCGAAGGGATATACAAACCATCCTTTGCTGGATTCGTCAATATTGATCATTCGGTAGTGGAAAGTTTTGGAGCAGGAGGAAGGACATGCATAACGTCTAGGGTTTATCCAACTTTAGCGGTGTTTAGTGATGCTCATTTATTTGTGTTCAACAATGGGACAGAAAGTGTTACTATCGAGAGTTTGGATGCTTGGAGCATGAAAACTCCTGTTATGAACTAGCTAGGGTAGAGAGATCATATATAAATCAAATTAATTAGGTTTCTAATTTATTTCTCCTTTTTAGTTTTAGTTTCGCCAAGAAAATCAGTACTGATTTTTCTG

Network for GWHGAAZE005799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.21	Glyco_hydro_32N	4	311	3.80E-97
PF08244.13	Glyco_hydro_32C	314	496	7.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.075
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.129
	SRR3591710	White floral bud	99.061
	SRR3591711	White flower	33.494
	SRR3591712	Green floral bud	28.267
	SRR3591713	Yellow flower	16.942
SRP173429	SRR8316895	Juvenile bud stage	29.566
	SRR8316896	Juvenile bud stage	25.255
	SRR8316897	Juvenile bud stage	5.405
	SRR8316894	Third green stage	7.717
	SRR8316900	Third green stage	37.990
	SRR8316901	Third green stage	40.059
	SRR8316898	Complete white stage	50.623
	SRR8316899	Complete white stage	163.653
	SRR8316903	Complete white stage	84.387
	SRR8316902	Silver flowering stage	29.744
	SRR8316904	Silver flowering stage	13.474
	SRR8316905	Silver flowering stage	0.661
	SRR8316906	Gold flowering stage	8.724
	SRR8316907	Gold flowering stage	6.767
	SRR8316908	Gold flowering stage	9.861
SRP132670	SRR6706286	Control	24.930
	SRR6706287	Light intensity 50%	24.221
	SRR6706288	Light intensity 20%	18.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.755
	CNS0095593	Slightly white alabastrum(diploid) 2	13.912
	CNS0095594	Slightly white alabastrum(diploid) 3	23.690
	CNS0095595	Whole white alabastrum(diploid) 2	13.969
	CNS0095596	Whole white alabastrum(diploid) 3	1.905
	CNS0095597	Whole white alabastrum(diploid) 4	6.727
	CNS0095598	Silvery flower (diploied) 1	16.182
	CNS0095599	Silvery flower (diploied) 2	4.934
	CNS0095600	Silvery flower (diploied) 3	36.033
	CNS0095601	Golden flower (diploid) 1	14.057
	CNS0095602	Golden flower (diploid) 2	31.757
	CNS0095603	Golden flower (diploid) 3	35.688
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.043
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.589
	CNS0095610	Silvery flower (tetraploid) 1	17.675
	CNS0095611	Silvery flower (tetraploid) 2	7.940
	CNS0095612	Silvery flower (tetraploid) 3	2.424
	CNS0095613	Golden flower (tetraploid) 1	4.162
	CNS0095614	Golden flower (tetraploid) 2	15.583
	CNS0095615	Golden flower (tetraploid) 3	6.118
CRA001975	CRR073297	Stem 1	27.075
	CRR073298	Stem 2	15.533
	CRR073299	Stem 3	36.448
	CRR073300	Leaf 1	17.930
	CRR073301	Leaf 2	15.973
	CRR073302	Leaf 3	13.690
	CRR073303	Juvenile bud 1	38.047
	CRR073304	Juvenile bud 2	19.935
	CRR073305	Juvenile bud 3	97.693
	CRR073306	Third green 1	0.405
	CRR073307	Third green 2	3.664
	CRR073308	Third green 3	3.239
	CRR073309	Second white 1	0.166
	CRR073310	Second white 2	0.820
	CRR073311	Second white 3	0.446
	CRR073312	Silver flowering 1	5.625
	CRR073313	Silver flowering 2	3.984
	CRR073314	Silver flowering 3	4.775
	CRR073315	Gold flowering 1	0.147
	CRR073316	Gold flowering 2	0.062
	CRR073317	Gold flowering 3	0.237
	CRR073318	Tawny withering 1	3.687
	CRR073319	Tawny withering 2	6.242
	CRR073320	Tawny withering 3	0.131