Detail information of GWHGAAZE005767


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009772221.13.52154E-35PREDICTED: CAAX prenyl protease 2, partial [Nicotiana sylvestris]
Swissprottr|Q8GW19|FACE2_ARATH3E-27CAAX prenyl protease 2
trEMBLtr|M0ZS19|M0ZS19_SOLTU7E-34Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006833}
TAIR10AT2G36305.17E-17farnesylated protein-converting enzyme 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1350007313503398-
GWHAAZE00000002mRNA1350007313503398-
GWHAAZE00000002exon1350337313503398-
GWHAAZE00000002exon1350234213502413-
GWHAAZE00000002exon1350135513501416-
GWHAAZE00000002exon1350105613501133-
GWHAAZE00000002exon1350007313500206-
GWHAAZE00000002CDS1350337313503398-
GWHAAZE00000002CDS1350234213502413-
GWHAAZE00000002CDS1350135513501416-
GWHAAZE00000002CDS1350105613501133-
GWHAAZE00000002CDS1350007313500206-
Transcript Sequence

Network for GWHGAAZE005767

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08658RCE1, FACE2 Biosynthesis of secondary metabolites map01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.201
SRR3591706second leaf1.527
SRR3591707mature leaf0.419
SRR3591708Shoot apex1.233
SRR3591709Stem0.943
SRR3591710White floral bud0.669
SRR3591711White flower0.514
SRR3591712Green floral bud1.029
SRR3591713Yellow flower0.829
SRP173429 SRR8316895Juvenile bud stage 2.386
SRR8316896Juvenile bud stage 2.998
SRR8316897Juvenile bud stage 1.538
SRR8316894Third green stage 1.058
SRR8316900Third green stage 4.300
SRR8316901Third green stage 5.219
SRR8316898Complete white stage 1.139
SRR8316899Complete white stage 5.918
SRR8316903Complete white stage 1.661
SRR8316902Silver flowering stage2.010
SRR8316904Silver flowering stage2.367
SRR8316905Silver flowering stage0.819
SRR8316906Gold flowering stage 3.093
SRR8316907Gold flowering stage 4.261
SRR8316908Gold flowering stage 2.894
SRP132670SRR6706286Control1.915
SRR6706287Light intensity 50%2.269
SRR6706288Light intensity 20%2.577
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.991
CNS0095593Slightly white alabastrum(diploid) 26.151
CNS0095594Slightly white alabastrum(diploid) 38.599
CNS0095595Whole white alabastrum(diploid) 27.281
CNS0095596Whole white alabastrum(diploid) 35.838
CNS0095597Whole white alabastrum(diploid) 46.605
CNS0095598Silvery flower (diploied) 14.454
CNS0095599Silvery flower (diploied) 23.473
CNS0095600Silvery flower (diploied) 31.297
CNS0095601Golden flower (diploid) 12.913
CNS0095602Golden flower (diploid) 22.290
CNS0095603Golden flower (diploid) 31.999
CNS0095604Slightly white alabastrum(tetraploid) 112.186
CNS0095605Slightly white alabastrum(tetraploid) 213.748
CNS0095606Slightly white alabastrum(tetraploid) 316.277
CNS0095607Whole white alabastrum(tetraploid) 18.999
CNS0095608Whole white alabastrum(tetraploid) 26.245
CNS0095609Whole white alabastrum(tetraploid) 37.082
CNS0095610Silvery flower (tetraploid) 14.130
CNS0095611Silvery flower (tetraploid) 23.452
CNS0095612Silvery flower (tetraploid) 34.258
CNS0095613Golden flower (tetraploid) 17.690
CNS0095614Golden flower (tetraploid) 26.937
CNS0095615Golden flower (tetraploid) 36.479
CRA001975CRR073297Stem 11.806
CRR073298Stem 21.679
CRR073299Stem 31.777
CRR073300Leaf 13.288
CRR073301Leaf 23.150
CRR073302Leaf 33.005
CRR073303Juvenile bud 12.539
CRR073304Juvenile bud 21.432
CRR073305Juvenile bud 31.212
CRR073306Third green 11.090
CRR073307Third green 20.685
CRR073308Third green 30.572
CRR073309Second white 10.252
CRR073310Second white 21.040
CRR073311Second white 30.144
CRR073312Silver flowering 10.305
CRR073313Silver flowering 20.677
CRR073314Silver flowering 30.607
CRR073315Gold flowering 12.071
CRR073316Gold flowering 21.008
CRR073317Gold flowering 30.682
CRR073318Tawny withering 11.749
CRR073319Tawny withering 23.190
CRR073320Tawny withering 31.337