Gene detail

Detail information of GWHGAAZE005753

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP15386.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFA2\|KIPK_ARATH	Serine/threonine-protein kinase KIPK
trEMBL	tr\|A0A068V3Z0\|A0A068V3Z0_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313\|EMBL:CDP15386.1}
TAIR10	AT3G52890.2	KCBP-interacting protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13246355	13249015	-
GWHAAZE00000002	mRNA	13246355	13249015	-
GWHAAZE00000002	exon	13248555	13249015	-
GWHAAZE00000002	exon	13246946	13247662	-
GWHAAZE00000002	exon	13246355	13246370	-
GWHAAZE00000002	CDS	13248555	13249015	-
GWHAAZE00000002	CDS	13246946	13247662	-
GWHAAZE00000002	CDS	13246355	13246370	-

Transcript Sequence
>GWHTAAZE005761 ATGGGCGATTACAGTAGTAGCACTAGCATTAGTGAAGAAAGCAATCTCAGCGGGTCTAGTTTTGGCAACCGACCTCATATGTCGAAGGATTTGAGGTGGGAAGCCATTCATCATGTTATGAAGTTGCACGGTTTTCTAGGGTTGAGACATTTCAATCTATTGAAAAAGCTCGGTTTTGGTGACATCGGTACAGTGTATCTGGCTCAGCTAATTGGAACAAGCTGCCTGTTTGCAATTAAGGTCATGGACATAGAGTTTTTGGGAAGAAGAAAGAAGATGCCAAGGGCCCAAACAGAAAGAGAAATTCTAAAAATTTTGGATCACCCTTTTCTCCCTACACTATATGCCCATTTTATATCGGATAACCTGTCGTGTTTGGTTATGGAGTATTGTCCAGGTGGAGATCTGCATGTCCTCCGGCAGAAGCAGCCTGGCAGATATTTTCCCGAACAAGCAGCAAGATTTTATGTTGCTGAAGTTCTCCTTGCTCTCGAATACTTACACATGCTTGGTGTTGTGTACCGAGACCTAAAGCCTGAAAACATTCTGGTCCGAGAAGACGGTCACATCATGCTTACAGATTTTGATCTCTCCCTCAGATGTTCTGTAAATCCAACCCTCCTTAAATCTCCTTCATTATGCATGGACCCACCTAGGATGTCGGGCCCATGTGCAGGTTCCAACTGCATAGACCCTTTCTGCATTAAACACAGCTGCCAAGTCTCATGCTTCAGCCCTAGGCTCTTACCTGGTGGACCAAAATCAAGAAAGGCAAAACCAGACCCCACAGCCCAAGCGAGGTCACTGCCTCAGCTCGTGGCCGAGCCAACAGATGCACGGTCGAATTCGTTCGTCGGCACCCATGAGTACCTTGCTCCCGAGATCATCAAAGGTGAGGGTCATGGTAGTGCCGTTGATTGGTGGACTTTTGGGGTCTTTCTTTACGAGCTTTTATATGGGAAGACGCCTTTTAAAGGGATGGGGAATGATGAAACATTGGCCAATGTAGTGATGAATAACCTCAAATTTCCCGATACTCCGCTTGTTAGTTTTCAGGCACGGGATTTGATCAGAGGGCTGTTGGTGAAGGAGCCAGAAAATCGGCTCGGATCGGAGAGAGGGGCTGCCGAGATTAAGCAGCACCCATTTTTCGAGGGGCTAAATTGGGCGCTGATACGGAAAATGGTTCGCTGA

Network for GWHGAAZE005753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	52	202	3.90E-36
PF00069.26	Pkinase	281	384	1.40E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.037
	SRR3591706	second leaf	8.297
	SRR3591707	mature leaf	4.493
	SRR3591708	Shoot apex	24.439
	SRR3591709	Stem	23.542
	SRR3591710	White floral bud	12.106
	SRR3591711	White flower	14.054
	SRR3591712	Green floral bud	18.289
	SRR3591713	Yellow flower	3.944
SRP173429	SRR8316895	Juvenile bud stage	10.020
	SRR8316896	Juvenile bud stage	10.675
	SRR8316897	Juvenile bud stage	4.528
	SRR8316894	Third green stage	6.624
	SRR8316900	Third green stage	14.787
	SRR8316901	Third green stage	12.359
	SRR8316898	Complete white stage	2.528
	SRR8316899	Complete white stage	12.665
	SRR8316903	Complete white stage	6.727
	SRR8316902	Silver flowering stage	1.193
	SRR8316904	Silver flowering stage	1.975
	SRR8316905	Silver flowering stage	0.995
	SRR8316906	Gold flowering stage	2.037
	SRR8316907	Gold flowering stage	1.441
	SRR8316908	Gold flowering stage	2.871
SRP132670	SRR6706286	Control	11.118
	SRR6706287	Light intensity 50%	11.468
	SRR6706288	Light intensity 20%	12.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.233
	CNS0095593	Slightly white alabastrum(diploid) 2	13.986
	CNS0095594	Slightly white alabastrum(diploid) 3	8.425
	CNS0095595	Whole white alabastrum(diploid) 2	10.201
	CNS0095596	Whole white alabastrum(diploid) 3	11.643
	CNS0095597	Whole white alabastrum(diploid) 4	7.135
	CNS0095598	Silvery flower (diploied) 1	13.599
	CNS0095599	Silvery flower (diploied) 2	9.044
	CNS0095600	Silvery flower (diploied) 3	8.397
	CNS0095601	Golden flower (diploid) 1	10.343
	CNS0095602	Golden flower (diploid) 2	12.392
	CNS0095603	Golden flower (diploid) 3	10.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.346
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.980
	CNS0095610	Silvery flower (tetraploid) 1	9.357
	CNS0095611	Silvery flower (tetraploid) 2	10.808
	CNS0095612	Silvery flower (tetraploid) 3	6.441
	CNS0095613	Golden flower (tetraploid) 1	3.061
	CNS0095614	Golden flower (tetraploid) 2	6.994
	CNS0095615	Golden flower (tetraploid) 3	2.010
CRA001975	CRR073297	Stem 1	31.154
	CRR073298	Stem 2	29.430
	CRR073299	Stem 3	34.048
	CRR073300	Leaf 1	21.209
	CRR073301	Leaf 2	21.516
	CRR073302	Leaf 3	16.677
	CRR073303	Juvenile bud 1	19.187
	CRR073304	Juvenile bud 2	10.310
	CRR073305	Juvenile bud 3	28.772
	CRR073306	Third green 1	2.877
	CRR073307	Third green 2	2.794
	CRR073308	Third green 3	6.091
	CRR073309	Second white 1	1.018
	CRR073310	Second white 2	1.351
	CRR073311	Second white 3	0.774
	CRR073312	Silver flowering 1	0.702
	CRR073313	Silver flowering 2	0.337
	CRR073314	Silver flowering 3	0.348
	CRR073315	Gold flowering 1	4.019
	CRR073316	Gold flowering 2	5.839
	CRR073317	Gold flowering 3	4.076
	CRR073318	Tawny withering 1	18.178
	CRR073319	Tawny withering 2	10.134
	CRR073320	Tawny withering 3	19.028