Gene detail

Detail information of GWHGAAZE005751

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010261378.1	PREDICTED: dnaJ protein ERDJ2A [Nelumbo nucifera]
Swissprot	tr\|Q0WT48\|DNJ21_ARATH	DnaJ protein ERDJ2A
trEMBL	tr\|M5XM57\|M5XM57_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20140.1}
TAIR10	AT1G79940.3	DnaJ / Sec63 Brl domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13214735	13221399	+
GWHAAZE00000002	mRNA	13214735	13221399	+
GWHAAZE00000002	exon	13214735	13214920	+
GWHAAZE00000002	exon	13215041	13215136	+
GWHAAZE00000002	exon	13215587	13215707	+
GWHAAZE00000002	exon	13215820	13215926	+
GWHAAZE00000002	exon	13216044	13216261	+
GWHAAZE00000002	exon	13216613	13216790	+
GWHAAZE00000002	exon	13216890	13217009	+
GWHAAZE00000002	exon	13217363	13217449	+
GWHAAZE00000002	exon	13219403	13219513	+
GWHAAZE00000002	exon	13220554	13221399	+
GWHAAZE00000002	CDS	13214735	13214920	+
GWHAAZE00000002	CDS	13215041	13215136	+
GWHAAZE00000002	CDS	13215587	13215707	+
GWHAAZE00000002	CDS	13215820	13215926	+
GWHAAZE00000002	CDS	13216044	13216261	+
GWHAAZE00000002	CDS	13216613	13216790	+
GWHAAZE00000002	CDS	13216890	13217009	+
GWHAAZE00000002	CDS	13217363	13217449	+
GWHAAZE00000002	CDS	13219403	13219513	+
GWHAAZE00000002	CDS	13220554	13221399	+

Transcript Sequence
>GWHTAAZE005759 ATGGCGGCATCTGATGAGAACAGTGCACTCTTCCCAATATTTATCTTGACTTTAATGGCACTACCTTTAGTGCCTTACACAATGGTCAAGTTATGTCGTGCTGCCACCAAAGAGGCAGCAAGCATCAATTGTCAGTGTTCAGTTTGCTTCCGCTCTGGGAAGTACCGCAAATCTATATTTAAACGCATATCAAACTTTTCAACATGGAGTAACCTGACCCTTGTACTGCTTTGGGTTCTCATGGCAGTCCTCGTGTACTACATAAAACATACTAGTCATGAGATACAAGTTTTTGAGCCATTCAGTATTCTTGGATTGGAGGCTGGAGCTTCGGATTCAGAAATAAAGAAAGCATATAGGAGACTTTCCATTCAATACCATCCTGATAAGAATCCAGATCCAGAGGCCCACAATTATTTTGTTGAATACATATCAAAGGCTTACCAGGCTCTAACAGATCCAATTTCGCGCGAGAACTTTGAAAAATATGGCCATCCAGATGGCAGGCAGGGACTTCAAATGGGAATAGCACTCCCTCAGTTTCTGCTAAACATTGATGGAGCATCTGGTGGAATACTATTACTTGGGATTGTTGGGGTTTGTATTATTTTACCTTTGATGATGGCTGTTATCTATTTATCAAGATCAGCGAAGTACACGGGGAATTATGTTATGCATCAAACACTATCTGCATATTACTACTTCATGAAGCCTTCTTTGGCTCCAAGCAAGGTTATGGATGTTTTCATAAAGGCAGCTGAATACATGGAAATTCCTGTTCGCCGAACTGATGGAGAACCTCTCCAGAAACTATTCATTTTAGTGAGGAGTGAGTTGAATCTGGATCTCAAGAACATTAAGCAAGAACAAGCCAAGTTTTGGAAGCAGCACCCTGCCTTAGTAAAGACAGAATTGTTAATTCAAGCCCAACTGACTCGTGAATCAGATGCTTTATCTCCTGCTTTGCGGCATGATTTTAGACGCGTGCTTGAACTTGCACCTCGACTTCTTGATGAATTGATCAAGATGGCAGTTCTACCACGCACTGCACAGGGGCATGGATGGCTGAGACCTGCAATTGGCGTGGTTGAGCTATCTCAAAGTATAATTCAGGCAGTTCCACTCAGTGCAAGAAAAGCAGCAGGAGGATCCAGCGAGGGAATTGCTCCATTTCTGCAACTGCCACACTTCAGTGAGGCAATTGTTAAAAAGATAGCAAGAAAGAAAGTGCGAACATTTCAAGAGCTTCAAGACATGGGTCTGCAGGAGCGTGCTGACCTTTTAACCCAGGTTGCCGGATTCACTGCTGCTGAATTCCAAGACGTGGAGATGGTTCTGGAAATGATGCCTTCCATAACCATCGACATCACATGTGAGACTGAAGGTGAAGACGGAATGCAAGAGGGTGACATCGTGACAATGCACACTTGGGTCACACTAAAGCGCAAAAATGGCCTAATTGGGGCGCTTCCACACGCTCCCTACTTCCCATTCCACAAGGAGGAGAATTTCTGGTTACTACTTGCAGACCCTGCCTCGAACGACGTGTGGATATCCCAAAAGGTTAGCTTCATGGATGAAGCTGCGGCCATAACTGCCGCATCGAAAGCGATTCAAGAATCGAAAGAGGGATCCGGGGCTAGCATGAAGGAGATTAAAGGGGCTGTTAAAGAAGCAGTCGAGAAAGTTAAACGCGGGTCGAGGCTAGTGATGGGTAAGTTCCAAGCCCCAGCTGAGGGAAATTATAATTTGACTTTGTACTGTTTGTGTGATTCTTGGATTGGTTGTGATAAGAAGACGGGATTGAAGTTAAAGGTATTGAAGAGGAGTAGAGTGGGGACCAGGGTTGGGGCTGTGGTAGAAGAGGGCCCGATTGTGGAGGATGGGGTGGAGGAGGAAGAGGAGGAGGGAGATGATGGGTATGATGATGATTATGAGAGTGAATATAGTGAAGATGATGAGGATGTAGTAAAACAGAAAGACGGGAAAGGAAATGTGGCTAATGGCTCTGCTGCACGTGCTAAAGGCAGCGGTTCGAGTTCAGATGGTTCAGCCACCGAGGAAGATTGA

Network for GWHGAAZE005751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	100	160	7.90E-19
PF02889.17	Sec63	222	600	1.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09540	SEC63, DNAJC23	Protein export	map03060
K09540	SEC63, DNAJC23	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.319
	SRR3591706	second leaf	18.930
	SRR3591707	mature leaf	22.521
	SRR3591708	Shoot apex	25.787
	SRR3591709	Stem	33.020
	SRR3591710	White floral bud	38.388
	SRR3591711	White flower	42.964
	SRR3591712	Green floral bud	32.442
	SRR3591713	Yellow flower	32.756
SRP173429	SRR8316895	Juvenile bud stage	24.030
	SRR8316896	Juvenile bud stage	33.955
	SRR8316897	Juvenile bud stage	14.440
	SRR8316894	Third green stage	14.982
	SRR8316900	Third green stage	33.266
	SRR8316901	Third green stage	34.855
	SRR8316898	Complete white stage	17.701
	SRR8316899	Complete white stage	54.680
	SRR8316903	Complete white stage	32.340
	SRR8316902	Silver flowering stage	20.323
	SRR8316904	Silver flowering stage	28.229
	SRR8316905	Silver flowering stage	12.808
	SRR8316906	Gold flowering stage	43.618
	SRR8316907	Gold flowering stage	40.936
	SRR8316908	Gold flowering stage	45.249
SRP132670	SRR6706286	Control	43.772
	SRR6706287	Light intensity 50%	41.079
	SRR6706288	Light intensity 20%	42.534
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.415
	CNS0095593	Slightly white alabastrum(diploid) 2	21.788
	CNS0095594	Slightly white alabastrum(diploid) 3	25.814
	CNS0095595	Whole white alabastrum(diploid) 2	18.976
	CNS0095596	Whole white alabastrum(diploid) 3	16.931
	CNS0095597	Whole white alabastrum(diploid) 4	19.173
	CNS0095598	Silvery flower (diploied) 1	27.003
	CNS0095599	Silvery flower (diploied) 2	25.212
	CNS0095600	Silvery flower (diploied) 3	37.247
	CNS0095601	Golden flower (diploid) 1	25.552
	CNS0095602	Golden flower (diploid) 2	37.352
	CNS0095603	Golden flower (diploid) 3	38.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.417
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.911
	CNS0095610	Silvery flower (tetraploid) 1	35.671
	CNS0095611	Silvery flower (tetraploid) 2	34.200
	CNS0095612	Silvery flower (tetraploid) 3	28.574
	CNS0095613	Golden flower (tetraploid) 1	19.421
	CNS0095614	Golden flower (tetraploid) 2	31.064
	CNS0095615	Golden flower (tetraploid) 3	33.870
CRA001975	CRR073297	Stem 1	30.327
	CRR073298	Stem 2	29.080
	CRR073299	Stem 3	25.585
	CRR073300	Leaf 1	30.779
	CRR073301	Leaf 2	30.092
	CRR073302	Leaf 3	26.571
	CRR073303	Juvenile bud 1	26.907
	CRR073304	Juvenile bud 2	24.697
	CRR073305	Juvenile bud 3	38.161
	CRR073306	Third green 1	18.956
	CRR073307	Third green 2	18.944
	CRR073308	Third green 3	19.463
	CRR073309	Second white 1	13.384
	CRR073310	Second white 2	17.158
	CRR073311	Second white 3	17.101
	CRR073312	Silver flowering 1	14.336
	CRR073313	Silver flowering 2	12.332
	CRR073314	Silver flowering 3	15.140
	CRR073315	Gold flowering 1	9.858
	CRR073316	Gold flowering 2	20.890
	CRR073317	Gold flowering 3	12.712
	CRR073318	Tawny withering 1	24.540
	CRR073319	Tawny withering 2	23.670
	CRR073320	Tawny withering 3	24.537