Detail information of GWHGAAZE005749


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABN05322.10starch branching enzyme II [Populus trichocarpa]
Swissprottr|Q41058|GLGB1_PEA01,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|A2TIS1|A2TIS1_POPTR0Starch branching enzyme II {ECO:0000313|EMBL:ABN05322.1}
TAIR10AT5G03650.10starch branching enzyme 2.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1317132513179764-
GWHAAZE00000002mRNA1317132513179764-
GWHAAZE00000002exon1317132513171432-
GWHAAZE00000002exon1317153513171609-
GWHAAZE00000002exon1317185813172013-
GWHAAZE00000002exon1317371613173793-
GWHAAZE00000002exon1317426713174367-
GWHAAZE00000002exon1317449913174646-
GWHAAZE00000002exon1317521813175362-
GWHAAZE00000002exon1317704613177149-
GWHAAZE00000002exon1317756513177696-
GWHAAZE00000002exon1317798913178099-
GWHAAZE00000002exon1317820613178335-
GWHAAZE00000002exon1317921813179337-
GWHAAZE00000002exon1317963713179764-
GWHAAZE00000002CDS1317963713179764-
GWHAAZE00000002CDS1317921813179337-
GWHAAZE00000002CDS1317820613178335-
GWHAAZE00000002CDS1317798913178099-
GWHAAZE00000002CDS1317756513177696-
GWHAAZE00000002CDS1317704613177149-
GWHAAZE00000002CDS1317521813175362-
GWHAAZE00000002CDS1317449913174646-
GWHAAZE00000002CDS1317426713174367-
GWHAAZE00000002CDS1317371613173793-
GWHAAZE00000002CDS1317185813172013-
GWHAAZE00000002CDS1317153513171609-
GWHAAZE00000002CDS1317132513171432-
Transcript Sequence

Network for GWHGAAZE005749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00128.25Alpha-amylase17884.20E-11
PF02806.19Alpha-amylase_C4075017.00E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00700GBE1, glgB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0005978biological_processglycogen biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0043169molecular_functioncation binding
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.060
SRR3591706second leaf0.743
SRR3591707mature leaf1.895
SRR3591708Shoot apex2.010
SRR3591709Stem5.677
SRR3591710White floral bud3.722
SRR3591711White flower1.723
SRR3591712Green floral bud5.191
SRR3591713Yellow flower0.480
SRP173429 SRR8316895Juvenile bud stage 4.129
SRR8316896Juvenile bud stage 6.394
SRR8316897Juvenile bud stage 2.328
SRR8316894Third green stage 2.855
SRR8316900Third green stage 4.937
SRR8316901Third green stage 5.902
SRR8316898Complete white stage 0.229
SRR8316899Complete white stage 2.274
SRR8316903Complete white stage 0.719
SRR8316902Silver flowering stage0.326
SRR8316904Silver flowering stage0.448
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.178
SRR8316907Gold flowering stage 0.396
SRR8316908Gold flowering stage 0.093
SRP132670SRR6706286Control1.219
SRR6706287Light intensity 50%1.137
SRR6706288Light intensity 20%1.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.745
CNS0095593Slightly white alabastrum(diploid) 25.904
CNS0095594Slightly white alabastrum(diploid) 36.265
CNS0095595Whole white alabastrum(diploid) 24.652
CNS0095596Whole white alabastrum(diploid) 34.814
CNS0095597Whole white alabastrum(diploid) 44.355
CNS0095598Silvery flower (diploied) 14.491
CNS0095599Silvery flower (diploied) 21.886
CNS0095600Silvery flower (diploied) 30.539
CNS0095601Golden flower (diploid) 14.257
CNS0095602Golden flower (diploid) 21.707
CNS0095603Golden flower (diploid) 31.569
CNS0095604Slightly white alabastrum(tetraploid) 14.007
CNS0095605Slightly white alabastrum(tetraploid) 23.079
CNS0095606Slightly white alabastrum(tetraploid) 30.861
CNS0095607Whole white alabastrum(tetraploid) 13.867
CNS0095608Whole white alabastrum(tetraploid) 21.764
CNS0095609Whole white alabastrum(tetraploid) 32.361
CNS0095610Silvery flower (tetraploid) 10.229
CNS0095611Silvery flower (tetraploid) 20.734
CNS0095612Silvery flower (tetraploid) 30.344
CNS0095613Golden flower (tetraploid) 10.083
CNS0095614Golden flower (tetraploid) 20.365
CNS0095615Golden flower (tetraploid) 30.029
CRA001975CRR073297Stem 12.922
CRR073298Stem 22.774
CRR073299Stem 30.981
CRR073300Leaf 12.154
CRR073301Leaf 22.241
CRR073302Leaf 30.380
CRR073303Juvenile bud 10.363
CRR073304Juvenile bud 20.332
CRR073305Juvenile bud 30.700
CRR073306Third green 10.000
CRR073307Third green 20.083
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.061
CRR073311Second white 30.054
CRR073312Silver flowering 10.010
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.015
CRR073315Gold flowering 10.857
CRR073316Gold flowering 21.018
CRR073317Gold flowering 30.677
CRR073318Tawny withering 11.522
CRR073319Tawny withering 21.932
CRR073320Tawny withering 31.627