Gene detail

Detail information of GWHGAAZE005748

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277233.3	1.2658E-120	PREDICTED: growth-regulating factor 3 [Vitis vinifera]
Swissprot	tr\|Q8L8A7\|GRF4_ARATH	2E-67	Growth-regulating factor 4
trEMBL	tr\|F6HKI6\|F6HKI6_VITVI	4E-119	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55408.1}
TAIR10	AT3G52910.1	5E-36	growth-regulating factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13166983	13170085	+
GWHAAZE00000002	mRNA	13166983	13170085	+
GWHAAZE00000002	exon	13166983	13167181	+
GWHAAZE00000002	exon	13167371	13167571	+
GWHAAZE00000002	exon	13168532	13168997	+
GWHAAZE00000002	exon	13169617	13170085	+
GWHAAZE00000002	CDS	13166983	13167181	+
GWHAAZE00000002	CDS	13167371	13167571	+
GWHAAZE00000002	CDS	13168532	13168997	+
GWHAAZE00000002	CDS	13169617	13170085	+

Transcript Sequence
>GWHTAAZE005756 ATGGACTTATATCTGAAGGAATGGAGAGAGCAGCAGCAGCAGCATGAGTCAGAATCAGACCAACAACAACAACAGCAACAACCCCTCCCACTGTTTTCATCTGAACCCACCACCACTACCACTACCACTACCTCCACCGCCACCAACTATCACCTGTCAGCACCATTCTTATCTCCTACTCATCCTTCCACATTTCCCAGGATGGCAAATGGAAGTAGTGGTTATTTGAGTGTGGGACAGAGGCAAGAACTTGAAGTGCAGGCATTGATATACAAGCATGTATTAGCTGGTGCTTCTATTCCTCCTCAACTCCAACTCCTATTCAACAAAACTCTTCTCAACTCTTCCCCTTCCCCTTATTACCACCTTCAACACTACTCCCCTTATTATCACCCTTCTTACATTCATATCTTTTGTTTACACAATCTAAACATTGGTGAGGACTTACATTGCATTATTATTATTATTTATTTATAATAATAATGTTTGAAATGGTTGTTAGCAGTGTTGCAATCAGGAGGTGGAGGATACTGGGGAAGAGGTGGAATGGATCCGGAGCCGGGGCGTTGCAGGAGGACAGATGGTAAGAAATGGAGGTGTTCCAGGGATGTGGTGTCTGGGCACAAGTACTGCGAGCGCCACGTCCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAATCCCCACACTCCCTCCTCCTCCTCCTCACGGTGGTGGTGGTGGAGTCGGAGTCATCCTTAAGACCAACATTAACAATGCAGCTGTTGCGGCTCAGTCCTTTACTCCAATGGCTGGTGGTGGAAGCACTCATTTTGCTCTTTCTGGAACTTCTCCTTCCTTTGATCTCCTTCACAGCAATCATAGGTCCTCTGACTTGATATATGAAAACAAGGGTCTATTTAGAGCAACCCAAAATGACTTATCCCACGACGGTAAATCCGGTGACCGGATTCTCCGTCACTTCTTTGATGATTGGCCAAAGTCAGTTCAAGAACATGAAAATGCTAGCTCGACGACTAATTCAGCCACAGGTCTCTCCATTTCAATCCCCGAGAACCCATCCTCGGACTTCTCATTAAAACTGTCTACAGGTAATGGAGAGGAGCAAGAGGCCAATAATCTTCAAGGAGGAGGGAATTATAATGTTGATGAACGACGAGAGCGAGCCCACTTGAACTGGGGTTCGACATGGGGGAGTAACCAGGTAGGCTCGATGGGTGGACCTCTTGCTGAGGCATTGAGATCATCTTCCACTTCAAATTCTTCGCCAACTAGCGTTCTGCATCAACTGCAGCGTGGCTCTGCATCTGAGGCCAGTTATATCAGCACTTGA

Network for GWHGAAZE005748

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	80	106	2.40E-07
PF08879.11	WRC	182	224	4.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.558
	SRR3591706	second leaf	0.684
	SRR3591707	mature leaf	0.374
	SRR3591708	Shoot apex	13.154
	SRR3591709	Stem	1.415
	SRR3591710	White floral bud	0.288
	SRR3591711	White flower	0.351
	SRR3591712	Green floral bud	1.521
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.777
	SRR8316896	Juvenile bud stage	2.528
	SRR8316897	Juvenile bud stage	2.182
	SRR8316894	Third green stage	2.138
	SRR8316900	Third green stage	3.403
	SRR8316901	Third green stage	3.041
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.633
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.077
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.666
	SRR6706287	Light intensity 50%	2.797
	SRR6706288	Light intensity 20%	3.546
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.369
	CNS0095593	Slightly white alabastrum(diploid) 2	6.167
	CNS0095594	Slightly white alabastrum(diploid) 3	3.038
	CNS0095595	Whole white alabastrum(diploid) 2	4.864
	CNS0095596	Whole white alabastrum(diploid) 3	5.629
	CNS0095597	Whole white alabastrum(diploid) 4	3.171
	CNS0095598	Silvery flower (diploied) 1	3.163
	CNS0095599	Silvery flower (diploied) 2	1.922
	CNS0095600	Silvery flower (diploied) 3	0.983
	CNS0095601	Golden flower (diploid) 1	6.650
	CNS0095602	Golden flower (diploid) 2	2.210
	CNS0095603	Golden flower (diploid) 3	1.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.531
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.171
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.003
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.832
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.240
	CNS0095612	Silvery flower (tetraploid) 3	0.066
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.104
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.803
	CRR073298	Stem 2	6.738
	CRR073299	Stem 3	5.540
	CRR073300	Leaf 1	4.056
	CRR073301	Leaf 2	3.866
	CRR073302	Leaf 3	1.586
	CRR073303	Juvenile bud 1	1.924
	CRR073304	Juvenile bud 2	0.545
	CRR073305	Juvenile bud 3	0.906
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.025
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.331
	CRR073316	Gold flowering 2	0.244
	CRR073317	Gold flowering 3	0.221
	CRR073318	Tawny withering 1	0.305
	CRR073319	Tawny withering 2	0.149
	CRR073320	Tawny withering 3	0.746