Gene detail

Detail information of GWHGAAZE005739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654041.1	0	PREDICTED: polyadenylation and cleavage factor homolog 4 [Vitis vinifera]
Swissprot	tr\|Q0WPF2\|PCFS4_ARATH	3E-55	Polyadenylation and cleavage factor homolog 4 {ECO:0000305}
trEMBL	tr\|F6HKH9\|F6HKH9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55401.1}
TAIR10	AT2G36480.3	1E-86	ENTH/VHS family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	12949051	12955124	+
GWHAAZE00000002	mRNA	12949051	12955124	+
GWHAAZE00000002	exon	12949051	12949419	+
GWHAAZE00000002	exon	12951005	12951106	+
GWHAAZE00000002	exon	12951243	12951503	+
GWHAAZE00000002	exon	12952486	12952614	+
GWHAAZE00000002	exon	12952709	12953164	+
GWHAAZE00000002	exon	12953298	12955124	+
GWHAAZE00000002	CDS	12949051	12949419	+
GWHAAZE00000002	CDS	12951005	12951106	+
GWHAAZE00000002	CDS	12951243	12951503	+
GWHAAZE00000002	CDS	12952486	12952614	+
GWHAAZE00000002	CDS	12952709	12953164	+
GWHAAZE00000002	CDS	12953298	12955124	+

Transcript Sequence
>GWHTAAZE005747 ATGGACAGTTCTCGTAGAGCATTCGATCGATCGACAGGTCTGAAGAAGCCTAGACTGTCCGAACAGGTCGCCGTTCCCAATTCCAACGGTCTGCCTTTCTTTCAACGACCATCGGCCGGTGGCGCTTCTGCATCTTCGAGATTCCGATCTAATGAGAGGGAAAGAGACTCAGAGAGTAGTGATTCAGCGGCAGGGGGGCTTTATTTACAGCAACAACAACATCAAGAGCTAGTCAGTCAGTACAGAACTGCTCTCGCGGAGCTGACCTTCAATTCGAAACCGATCATTACTAACTTAACTATTATCGCCGGCGAGAATTTACATGCTGCAAAGGCAATCGCCGGCACTGTCTGCACCAATATTCTCGAGGTCCCTACTGAGCAAAAGCTGCCATCACTCTATCTTCTAGACAGTATTGTGAAGAATATTGGGAGGGATTACATAAAATACTTTGCTGCCAAACTACCGGAGGTTTTCTGCAAGGCATATAGGCAGGTTGACCCTGCAACACATCCTAATATGCGGCATCTTTTTGGCACTTGGAAAGGAGTGTTCCCTCCTCAATCACTTCAGATGATTGAGAAAGAACTTGGCTTTATCCCTGCTGTCAATGGTTCAACTTCAGGGACAACAATATCTAGGCCTGATTCACAGTCTCAGCGCCCAGGACACAGCATTCATGTAAATCCCAAGTATCTAGAGGCAAGGCAGCGGCTTCAGCAGTCAAGCAGGGCAAAAGGAGCCACCGGTGACATAACTGCAACCCTGGTTAATGATTCAGCCGAGGATACTGAGAGACTTGATAAAAAAGCTAATGTTAGTTCTGGGAGGCGAGGGGCTGATCCTCGTATTAAGATGCATAATATTCAGCGTCCTCAAAGAGATTTAGCGAGTGAGCCTGTTTGTGAGAAAAATATTGGTGCCGTATATGGGGAATATGAACATGATTCAGATCTTTCAAAGCATTCAGTGTTGGGAAGTGGAAAAGCCAGTGAAAGGGTTACAGAGCAAGGATTTGACAAGCCTTGGTATGGGGCTGGCAGCAATATTCCAGAGACAATATCCAGCCAAAGGAACGGTTCTGATATTAAGCAAGGACTCCTAAATTATTCAGCCTCTAAATCTGCAAAGGCTGATGCTAAGCTACAGCTTATGCAAAGCCTTGCCAGTAGAAGCAGCTGTGGGATTACAAGAAGCTGGAAGAATTCCGAGGAAGAGGAGTACAGTTGGGATGATATGAACCCTAGAACAACAAATCATGGTGCAACCAGTAATTTGAGGAAAGATTCTTGGATTCCGAATGATGCTGAAAAATTGGACTATGAGAACCTCCGAGGACCACCAAGCGTGCATGATGCGAGCAGGGTAGACAGAGAAGCTTCAACTGATTCACTACCTTCAGATCTGAAAGATCAAAGGTCTTTTGGAAATCGAATGTCATCATCACCGTGGACACAAGAACCCCGAGTAACAGATGGGTTGAGCTATTCAGGCCCGGGAAAAATTATTTCGGGTCATTCAGAAGGTTACCCTGTATCTTTTAGTGGGTTGTCGAAAACTGTGAATGCTTCTAGGGCACCTTTACAATCTCAGATGGGGTCCCCTCATATTGGAGTTCCTAGCTTTGGGCTTTCGACAAAACCAATGTCGGGGTCCACTGGATTGGTACAGCAACAGAGAAACACTCAGTCACCCATGCACCAACATCCTCCCTCACCTTCTTTCTCTGATCGTCATTCCAGTCAATTAGTGCATAATTTAGCCGAGCAGGACCATCTGCAAGCTCAGCCCTTGCCTGGTGGAGATTTTGGAGCATCTCGATTTTCAGGACAATTACACATAGAACCTCAAAGCCAATTTTCTCAAGATTCTCCACTATTGCGGCCTCCTCAGAATGTTCATCTTGGTAACTTGCAAAGGTCACTGCCCCAAAATTTGCAGGCTGCTTCTCCTATAATCCCATCTTTTCAACCGAGGCAACGTATTCCCTTTTCACATCAGCTAAAGCCAGAATCGACAGAGTCTGAACCTTCTGCCCAATCCCTCAAACATCTGCTGCCTCAGATCCCAGTTGTCACGGGGAAGTCTTCATCGGACCATCCAAGTCCTCTTGTGACAGAATCTGCAGGACAGTCAACTACCAGTAGCCTGTTGGCTGCTGTTATGAATAGCGGAATACTTGGTAACAAATCTGTTACTGGTAGCCAACAGCCCCCTCTACCAAGTGGCCCACCTCCCCCTTCCCAAGAAAGCAAACCCATTTCCACATCTCTTGTTCAGAAGAAATCGGAACGGCCACCACTGCCACCTGGGCCGCCTCCTCCCTCTAATGCGGCAAATGTGGAGTCTAGTCCAGTTTCAAGTCTATTGAGCTCATTGGTTGCGAAAGGATTGATTTCCGCAAAGAAAGACTCACCTAATCTCGACCTAACTCAGATTTTAACTCAACCCCTTAGCCAAAATCCTGGAAGGGCTACAACTTCTCCAGTTCCAGTTTCTTCATCCGTCTCACCTTCATCTACGAACGACGACCTTTCTTCCTCCAAACTTGCTGCTAAAAGCTCTGTGTCCTTAACCCAGTCCACCATGACAGAGATAAATAATCTCATTGGTTTTGAGTTCAAGTCAGATATTTTACGGGAGTCTCATCCAGCTGTGGTCGCTGAACTCCTTGATGATTTTCCACATCAGTGCTCCATATGTGGTCTTAGAATTAAACATAAAGAACAATTTGATAGGCACATGGAGTGGCATGCACTGAGAAATCCCGAGCTGAACGGTTTAAACAGGGTTTCAAGAGGTTGGTATGCGACTTCAGCTGACTGGATTGCTGGAAAGTCTAGTCATTCTAGTTTTGAATCCGCTGACTTGTTGGGAGGTTCTGTTAAGGCAGTGGAGGATAGTGGGGAGATGGTTCCTGCAGATGAAGGTCAATGTGTATGCCTCTTGTGCGGTGAGCTTTTTGAAGATTTTTATAGTCAAGAAAAGGATAGATGGATGTTCAAAGGAGCTGTTTACCTTACTATTCCCCCAGATGGTATGGTTGGAAATACAAGCAGCAGTGCTGCTGAGGGTCCTATTGTCCATGTTGATTGCGTATCAGAATGTTCTGTTCGTGATTTGGGATTTGTCAACAAGGTTTAA

Network for GWHGAAZE005739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04818.14	CID	83	191	1.30E-13

Protein Sequence

>GWHPAAZE005743
MDSSRRAFDRSTGLKKPRLSEQVAVPNSNGLPFFQRPSAGGASASSRFRSNERERDSESSDSAAGGLYLQQQQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLHAAKAIAGTVCTNILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPATHPNMRHLFGTWKGVFPPQSLQMIEKELGFIPAVNGSTSGTTISRPDSQSQRPGHSIHVNPKYLEARQRLQQSSRAKGATGDITATLVNDSAEDTERLDKKANVSSGRRGADPRIKMHNIQRPQRDLASEPVCEKNIGAVYGEYEHDSDLSKHSVLGSGKASERVTEQGFDKPWYGAGSNIPETISSQRNGSDIKQGLLNYSASKSAKADAKLQLMQSLASRSSCGITRSWKNSEEEEYSWDDMNPRTTNHGATSNLRKDSWIPNDAEKLDYENLRGPPSVHDASRVDREASTDSLPSDLKDQRSFGNRMSSSPWTQEPRVTDGLSYSGPGKIISGHSEGYPVSFSGLSKTVNASRAPLQSQMGSPHIGVPSFGLSTKPMSGSTGLVQQQRNTQSPMHQHPPSPSFSDRHSSQLVHNLAEQDHLQAQPLPGGDFGASRFSGQLHIEPQSQFSQDSPLLRPPQNVHLGNLQRSLPQNLQAASPIIPSFQPRQRIPFSHQLKPESTESEPSAQSLKHLLPQIPVVTGKSSSDHPSPLVTESAGQSTTSSLLAAVMNSGILGNKSVTGSQQPPLPSGPPPPSQESKPISTSLVQKKSERPPLPPGPPPPSNAANVESSPVSSLLSSLVAKGLISAKKDSPNLDLTQILTQPLSQNPGRATTSPVPVSSSVSPSSTNDDLSSSKLAAKSSVSLTQSTMTEINNLIGFEFKSDILRESHPAVVAELLDDFPHQCSICGLRIKHKEQFDRHMEWHALRNPELNGLNRVSRGWYATSADWIAGKSSHSSFESADLLGGSVKAVEDSGEMVPADEGQCVCLLCGELFEDFYSQEKDRWMFKGAVYLTIPPDGMVGNTSSSAAEGPIVHVDCVSECSVRDLGFVNKV

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
K14400	PCF11	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.197
	SRR3591706	second leaf	9.669
	SRR3591707	mature leaf	19.321
	SRR3591708	Shoot apex	12.225
	SRR3591709	Stem	17.421
	SRR3591710	White floral bud	16.798
	SRR3591711	White flower	23.744
	SRR3591712	Green floral bud	17.484
	SRR3591713	Yellow flower	19.640
SRP173429	SRR8316895	Juvenile bud stage	7.604
	SRR8316896	Juvenile bud stage	10.612
	SRR8316897	Juvenile bud stage	5.153
	SRR8316894	Third green stage	4.466
	SRR8316900	Third green stage	10.387
	SRR8316901	Third green stage	11.310
	SRR8316898	Complete white stage	3.812
	SRR8316899	Complete white stage	14.833
	SRR8316903	Complete white stage	8.898
	SRR8316902	Silver flowering stage	6.218
	SRR8316904	Silver flowering stage	8.378
	SRR8316905	Silver flowering stage	4.041
	SRR8316906	Gold flowering stage	12.106
	SRR8316907	Gold flowering stage	13.127
	SRR8316908	Gold flowering stage	14.732
SRP132670	SRR6706286	Control	14.111
	SRR6706287	Light intensity 50%	14.041
	SRR6706288	Light intensity 20%	13.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.096
	CNS0095593	Slightly white alabastrum(diploid) 2	7.150
	CNS0095594	Slightly white alabastrum(diploid) 3	6.727
	CNS0095595	Whole white alabastrum(diploid) 2	6.118
	CNS0095596	Whole white alabastrum(diploid) 3	5.113
	CNS0095597	Whole white alabastrum(diploid) 4	5.796
	CNS0095598	Silvery flower (diploied) 1	10.908
	CNS0095599	Silvery flower (diploied) 2	7.996
	CNS0095600	Silvery flower (diploied) 3	17.814
	CNS0095601	Golden flower (diploid) 1	9.762
	CNS0095602	Golden flower (diploid) 2	20.356
	CNS0095603	Golden flower (diploid) 3	21.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.305
	CNS0095610	Silvery flower (tetraploid) 1	22.884
	CNS0095611	Silvery flower (tetraploid) 2	22.205
	CNS0095612	Silvery flower (tetraploid) 3	19.331
	CNS0095613	Golden flower (tetraploid) 1	14.693
	CNS0095614	Golden flower (tetraploid) 2	19.043
	CNS0095615	Golden flower (tetraploid) 3	24.710
CRA001975	CRR073297	Stem 1	26.617
	CRR073298	Stem 2	22.447
	CRR073299	Stem 3	17.928
	CRR073300	Leaf 1	22.498
	CRR073301	Leaf 2	24.151
	CRR073302	Leaf 3	17.156
	CRR073303	Juvenile bud 1	14.631
	CRR073304	Juvenile bud 2	11.423
	CRR073305	Juvenile bud 3	26.309
	CRR073306	Third green 1	10.832
	CRR073307	Third green 2	8.302
	CRR073308	Third green 3	11.350
	CRR073309	Second white 1	9.804
	CRR073310	Second white 2	10.250
	CRR073311	Second white 3	13.002
	CRR073312	Silver flowering 1	13.748
	CRR073313	Silver flowering 2	14.276
	CRR073314	Silver flowering 3	10.536
	CRR073315	Gold flowering 1	12.479
	CRR073316	Gold flowering 2	19.132
	CRR073317	Gold flowering 3	14.137
	CRR073318	Tawny withering 1	19.387
	CRR073319	Tawny withering 2	18.959
	CRR073320	Tawny withering 3	16.796