Gene detail

Detail information of GWHGAAZE005692

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266505.1	PREDICTED: ABC transporter B family member 1 [Vitis vinifera]
Swissprot	tr\|Q9ZR72\|AB1B_ARATH	ABC transporter B family member 1
trEMBL	tr\|F6HKB3\|F6HKB3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55335.1}
TAIR10	AT2G36910.1	ATP binding cassette subfamily B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	12129127	12136786	+
GWHAAZE00000002	mRNA	12129127	12136786	+
GWHAAZE00000002	exon	12129127	12129193	+
GWHAAZE00000002	exon	12129259	12129614	+
GWHAAZE00000002	exon	12129714	12129768	+
GWHAAZE00000002	exon	12129861	12130036	+
GWHAAZE00000002	exon	12130128	12130328	+
GWHAAZE00000002	exon	12130437	12130696	+
GWHAAZE00000002	exon	12130792	12131108	+
GWHAAZE00000002	exon	12131298	12131521	+
GWHAAZE00000002	exon	12132996	12133369	+
GWHAAZE00000002	exon	12133668	12134382	+
GWHAAZE00000002	exon	12135500	12136786	+
GWHAAZE00000002	CDS	12129127	12129193	+
GWHAAZE00000002	CDS	12129259	12129614	+
GWHAAZE00000002	CDS	12129714	12129768	+
GWHAAZE00000002	CDS	12129861	12130036	+
GWHAAZE00000002	CDS	12130128	12130328	+
GWHAAZE00000002	CDS	12130437	12130696	+
GWHAAZE00000002	CDS	12130792	12131108	+
GWHAAZE00000002	CDS	12131298	12131521	+
GWHAAZE00000002	CDS	12132996	12133369	+
GWHAAZE00000002	CDS	12133668	12134382	+
GWHAAZE00000002	CDS	12135500	12136786	+

Transcript Sequence
>GWHTAAZE005700 CAAGCAATGTCACAAGATTCTGAGGGGATTAACACAATTGAGCAGTGGAAATGGTCTGAAATGCAAGGCAACCCTTCCCCAACACTAGTTCCATCTACAGACGACATTCAAACAAAACAGGGCCAAGAAGACTCTTCTGTACACAGTGAATTGGGAGAAACAAGAGAAAAAATGGAGGTCTCTGAGGGAAAAAAAGATGCTGGTGATCAAGACAAGACTGGTTCTTCACCTCCCTCATCCGGGTTTGGTGAGCTTTTCAGATTTGCAGATAACTTGGACTATGTTTTAATGGGAATTGGAACAGTGGGCGCCTTTGTTCATGGATGTTCTTTGCCCCTGTTTCTCCGCTTCTTTGCTGATCTTGTTAATTCTTTTGGCTCTAATGCCAACAATATTGATAAGATGACACATGAAGTTTTAAAGTATGCATTTTACTTTCTTATAGTTGGAGCTGCAATATGGGCATCTTCATGGGCAGAGATATCATGTTGGATGTGGACAGGAGAAAGACAGTCCACAAGAATGAGGATCAAGTACCTAGAAGCTGCACTCAACCAAGACATCCAATTCTTTGATACAGAGGTCCGCACATCCGACGTCGTTTCTGCCATTAACACTGATGCAGTCATGGTCCAAGACGCCATTAGCGAAAAGTTGGGTAATTTTATACACTATATGGCAACATTTGTATCTGGATTTGTGGTGGGTTTCACAGCTGTGTGGCAATTAGCACTTGTTACACTTGCTGTGGTTCCTCTCATAGCTGTAATCGGAGGTATTCACACCACCACATTAGCTAAACTTTCTTCCAAGAGCCAAGAATCTCTTTCACAAGCAGGGAACATTGCCGAGCAGACAATAGTTCAAATTCGGACAGTTATGGCATTTGTCGGTGAATCAAGAGCATTACAAGCCTACTCGTCTGCCTTGAGGGTCGCTCAAAGACTCGGCTATAAAAGCGGATTTTCAAAGGGAATGGGACTAGGGGCAACTTACTTCACTGTATTTTGCTGTTATGCTCTTCTTCTTTGGTATGGAGGCTATCTTGTTAGGCACCATTACACCAATGGTGGACTTGCCATTGCCACAATGTTCTCTGTTATGATAGGTGGACTTGCATTAGGACAATCAGCTCCGAGTATGACTGCATTTGCAAAGGCTAGAGTTGCAGCTGCTAAAATTTTTCGTATAATCGATCACAAACCAAGTGTTGACAAGAATGTCGAATCGGGTCTTGAATTTGACTCTGTTTCGGGGCAAGTGGAGCTTAAAAATGTTGATTTTTGTTACCCATCCAGGCCGGATGTTAAAATACTCAACAATTTCTCACTCACTGTCCCATCTGGGAAAACCATAGCTTTGGTTGGAAGTAGCGGCTCTGGGAAGAGCACTGTCGTTTCCCTAATAGAGAGATTTTATGATCCCACCTCAGGGCAAGTTGTTCTTGATGGGCATGACATAAAGACACTAAAGCTGAGATGGCTCAGGCAGCAAATTGGGCTTGTGAGCCAAGAGCCAGCTCTTTTTGCTACCACCATTAAAGAAAACATACTCTTGGGTAGGCCTGATGCAAGCCTTGTTGAGATCGAAGAAGCTGCCAGAGTAGCCAATGCCCATTCGTTTATTATCAAATTACCTGATGGCTACGACACTCAGGTAGGGGAGAGGGGATTGCAACTCTCGGGTGGACAAAAGCAAAGAATAGCTATAGCAAGGGCAATGCTTAAAAACCCAGCAATACTACTTTTAGATGAGGCTACAAGCGCATTAGACTCCGAGTCAGAAAAGCTTGTGCAAGAGGCTCTTGACCGGTTCATGATTGGGAGGACTACTCTAGTAATTGCCCATCGCCTCTCCACCATCAGAAAAGCTGACCTTGTTGCTGTGCTGCAGCAGGGGACCGTCTCTGAAATTGGGGCCCACGAAGAACTCATAGCCAAAGGTGACAATGGCGTCTATGCTAAGCTTATCCGTATGCAAGAAATAGCTCATGAAACTGCTCTTAATAATGCCCGAAAGAGCAGTGCAAGGCCATCTAGTGCTAGAAACTCAGTGAGTTCACCTATTATTGCCCGTAACTCCTCCTATGCAAGATCACCATACTCACGAAGATTATCAGACTTTTCTACCTCTGACTTTAGCCTATCAATGGATGCCACGTACCCCAATTACCGGCACGAAAAGCTTCCTTTCAAGGAGCAAGCGAGCTCCTTCTGGCGTCTGGCAAAATTGAACTCTCCTGAATGGGCTTATGCTTTAGTTGGTTCCGTTGGTTCTGTAGTTTGCGGCTCACTTAGTGCCTTCTTCGCTTATGTCCTAAGCGCGGTCCTTAGTGTTTACTACAATCAGGACCACGCTTACATGATCAGAGAAATCGGTAAATACTGTTATCTGTTAATTGGCGTTTCATCCGCTGCACTTATTTTCAACACACTACAGCATTTTTTCTGGGACGTTGTGGGGGAAAATTTAACCAAGCGGGTGAGGGAGAAAATGCTGGCAGCGGTGCTGAAAAATGAAATGGCATGGTTTGATCAAGAGGAAAACGAGAGTTCAAGAATCGCAGCTAGGCTGGCTCTCGATGCCAACAATGTTAGATCAGCCATTGGGGATAGAATTTCAGTGATCGTTCAGAACTCGGCCCTCATGCTAGTTGCCTGCACAGCCGGGTTCGTTTTGCAGTGGCGGTTGGCCCTTGTACTCATAGCCGTCTTCCCTGTTGTTGTGGCAGCCACTGTTTTGCAGAAAATGTTCATGCAAGGATTCTCAGGAGACTTGGAAGGTGCACATGCCAAAGCCACACAACTAGCTGGTGAGGCAGTGGCGAATGTAAGGACCGTAGCTGCCTTTAACTCAGAATCCAAAATCGTCGGCCTTTTCACCTCCAACCTTCAAACTCCACTACGGCGGTGCTTCTGGAAGGGACAAATAGCCGGGAGTGGATACGGGATAGCCCAATTCTTACTATATGCTTCGTACGCCCTCGGTCTTTGGTATGCCTCGTGGCTCGTAAAGCACGGTATCTCAGACTTCTCAAAGACAATCCGTGTCTTCATGGTCCTTATGGTCTCCGCAAACGGTGCAGCCGAGACATTAACACTGGCTCCCGACTTCATAAAGGGTGGTCGAGCCATGAGGTCCGTGTTTGACCTCCTCGACCGAAAAACCGAGATCGAACCAGACGACCCTGATTCCATCCCGGTCCCCGACACCCTTCGGGGAGAAGTGGAGCTCAAGCACGTAGACTTCACCTACCCCTCCCGCCCCGACATGCCTGTATTCCGTGATCTCACTCTTCGAGCTCGAGCCGGCAAAACTCTTGCCCTTGTAGGTCCCAGTGGGTGTGGTAAGAGCTCGGTCATTGCACTTATACAGCGGTTCTACGAGCCGTCATCTGGGCGCGTGACAATTGATGGAAAGGATATTCGGAAGTATAATCTGAAGTCACTGAGACGCCACATTGCTATAGTGCCACAAGAACCATGTCTATTCGCTAGTACAATATATGAAAACATTGCATACGGGCACGAGTCAGTAACCGAAACCGAAGTGATCGAGGCGGCAACATTGGGAAATGCACACAAGTTCATATCGTCACTTCCAGACGGATACAAAACTTTTGTGGGAGAAAGGGGAGTTCAACTCTCGGGTGGACAGAAGCAAAGGATTGCAATTGCTCGGGCTTTTATAAGGAAGGCAGAGATTATGCTACTGGATGAAGCTACTAGTGCACTTGATGCAGAGTCAGAAAGGTGCGTGCAAGAGGCTCTGGAGCGGGTTTGCTCTGGTAAGACCACCATTGTGGTTGCACACCGGCTATCGACTATAAGAAATGCGCATGTTATTGCTGTTATAGATGATGGGAAAGTGGCAGAACAAGGGTCCCACTCGCATCTATTGAAGAATTATCCGGATGGGTGTTATGCTCGTATGATAAATTTACAAAGGTTCTCGCATGGCCAGGCTGTCAGTATGGTGTCAGGTTCAACCTCTTCGGCCCGGCCAGGAGACGACGAGGATAGAGAGGGCTAG

Network for GWHGAAZE005692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	98	370	2.30E-59
PF00005.28	ABC_tran	439	588	1.80E-36
PF00664.24	ABC_membrane	757	1023	7.30E-54
PF00005.28	ABC_tran	1095	1243	3.30E-34

Protein Sequence

>GWHPAAZE005696
QAMSQDSEGINTIEQWKWSEMQGNPSPTLVPSTDDIQTKQGQEDSSVHSELGETREKMEVSEGKKDAGDQDKTGSSPPSSGFGELFRFADNLDYVLMGIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANNIDKMTHEVLKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALNQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTTTLAKLSSKSQESLSQAGNIAEQTIVQIRTVMAFVGESRALQAYSSALRVAQRLGYKSGFSKGMGLGATYFTVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMTAFAKARVAAAKIFRIIDHKPSVDKNVESGLEFDSVSGQVELKNVDFCYPSRPDVKILNNFSLTVPSGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVVLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDASLVEIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGTVSEIGAHEELIAKGDNGVYAKLIRMQEIAHETALNNARKSSARPSSARNSVSSPIIARNSSYARSPYSRRLSDFSTSDFSLSMDATYPNYRHEKLPFKEQASSFWRLAKLNSPEWAYALVGSVGSVVCGSLSAFFAYVLSAVLSVYYNQDHAYMIREIGKYCYLLIGVSSAALIFNTLQHFFWDVVGENLTKRVREKMLAAVLKNEMAWFDQEENESSRIAARLALDANNVRSAIGDRISVIVQNSALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEGAHAKATQLAGEAVANVRTVAAFNSESKIVGLFTSNLQTPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDSIPVPDTLRGEVELKHVDFTYPSRPDMPVFRDLTLRARAGKTLALVGPSGCGKSSVIALIQRFYEPSSGRVTIDGKDIRKYNLKSLRRHIAIVPQEPCLFASTIYENIAYGHESVTETEVIEAATLGNAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFIRKAEIMLLDEATSALDAESERCVQEALERVCSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMINLQRFSHGQAVSMVSGSTSSARPGDDEDREG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.459
	SRR3591706	second leaf	19.867
	SRR3591707	mature leaf	2.883
	SRR3591708	Shoot apex	32.872
	SRR3591709	Stem	36.657
	SRR3591710	White floral bud	11.036
	SRR3591711	White flower	6.725
	SRR3591712	Green floral bud	14.517
	SRR3591713	Yellow flower	1.160
SRP173429	SRR8316895	Juvenile bud stage	12.190
	SRR8316896	Juvenile bud stage	12.659
	SRR8316897	Juvenile bud stage	6.788
	SRR8316894	Third green stage	5.340
	SRR8316900	Third green stage	9.755
	SRR8316901	Third green stage	8.527
	SRR8316898	Complete white stage	1.278
	SRR8316899	Complete white stage	12.349
	SRR8316903	Complete white stage	3.315
	SRR8316902	Silver flowering stage	0.865
	SRR8316904	Silver flowering stage	1.453
	SRR8316905	Silver flowering stage	0.496
	SRR8316906	Gold flowering stage	2.018
	SRR8316907	Gold flowering stage	2.191
	SRR8316908	Gold flowering stage	3.771
SRP132670	SRR6706286	Control	9.555
	SRR6706287	Light intensity 50%	8.765
	SRR6706288	Light intensity 20%	9.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.883
	CNS0095593	Slightly white alabastrum(diploid) 2	16.201
	CNS0095594	Slightly white alabastrum(diploid) 3	10.754
	CNS0095595	Whole white alabastrum(diploid) 2	9.376
	CNS0095596	Whole white alabastrum(diploid) 3	6.656
	CNS0095597	Whole white alabastrum(diploid) 4	5.080
	CNS0095598	Silvery flower (diploied) 1	13.071
	CNS0095599	Silvery flower (diploied) 2	9.637
	CNS0095600	Silvery flower (diploied) 3	6.564
	CNS0095601	Golden flower (diploid) 1	8.499
	CNS0095602	Golden flower (diploid) 2	8.445
	CNS0095603	Golden flower (diploid) 3	7.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.306
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.520
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.774
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.011
	CNS0095610	Silvery flower (tetraploid) 1	2.354
	CNS0095611	Silvery flower (tetraploid) 2	5.755
	CNS0095612	Silvery flower (tetraploid) 3	2.644
	CNS0095613	Golden flower (tetraploid) 1	0.475
	CNS0095614	Golden flower (tetraploid) 2	1.863
	CNS0095615	Golden flower (tetraploid) 3	0.318
CRA001975	CRR073297	Stem 1	20.711
	CRR073298	Stem 2	20.106
	CRR073299	Stem 3	24.026
	CRR073300	Leaf 1	19.815
	CRR073301	Leaf 2	17.507
	CRR073302	Leaf 3	14.716
	CRR073303	Juvenile bud 1	17.487
	CRR073304	Juvenile bud 2	13.854
	CRR073305	Juvenile bud 3	32.589
	CRR073306	Third green 1	2.067
	CRR073307	Third green 2	2.760
	CRR073308	Third green 3	3.742
	CRR073309	Second white 1	0.776
	CRR073310	Second white 2	0.894
	CRR073311	Second white 3	0.453
	CRR073312	Silver flowering 1	1.057
	CRR073313	Silver flowering 2	0.483
	CRR073314	Silver flowering 3	0.569
	CRR073315	Gold flowering 1	4.860
	CRR073316	Gold flowering 2	5.861
	CRR073317	Gold flowering 3	7.807
	CRR073318	Tawny withering 1	65.783
	CRR073319	Tawny withering 2	46.839
	CRR073320	Tawny withering 3	74.224