Detail information of GWHGAAZE005680


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004143280.10PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like [Cucumis sativus]
Swissprottr|O04376|2A5B_ARATH0Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform
trEMBLtr|A0A0A0KF65|A0A0A0KF65_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN48198.1}
TAIR10AT3G09880.10Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1190521211910074-
GWHAAZE00000002mRNA1190521211910074-
GWHAAZE00000002exon1190892011910074-
GWHAAZE00000002exon1190521211905593-
GWHAAZE00000002CDS1190892011910074-
GWHAAZE00000002CDS1190528811905593-
GWHAAZE00000002three_prime_UTR1190521211905287-
Transcript Sequence

Network for GWHGAAZE005680

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01603.21B56704792.10E-187
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11584PPP2R5 mRNA surveillance pathway map03015
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Meiosis - yeastmap04113
Oocyte meiosismap04114
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0007165biological_processsignal transduction
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0019888molecular_functionprotein phosphatase regulator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.119
SRR3591706second leaf13.041
SRR3591707mature leaf20.942
SRR3591708Shoot apex16.760
SRR3591709Stem20.800
SRR3591710White floral bud24.677
SRR3591711White flower23.922
SRR3591712Green floral bud32.168
SRR3591713Yellow flower18.047
SRP173429 SRR8316895Juvenile bud stage 9.476
SRR8316896Juvenile bud stage 12.207
SRR8316897Juvenile bud stage 5.224
SRR8316894Third green stage 7.958
SRR8316900Third green stage 29.114
SRR8316901Third green stage 27.223
SRR8316898Complete white stage 11.951
SRR8316899Complete white stage 34.510
SRR8316903Complete white stage 17.084
SRR8316902Silver flowering stage7.650
SRR8316904Silver flowering stage11.424
SRR8316905Silver flowering stage6.068
SRR8316906Gold flowering stage 14.964
SRR8316907Gold flowering stage 15.884
SRR8316908Gold flowering stage 13.047
SRP132670SRR6706286Control25.440
SRR6706287Light intensity 50%24.721
SRR6706288Light intensity 20%25.562
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.253
CNS0095593Slightly white alabastrum(diploid) 214.100
CNS0095594Slightly white alabastrum(diploid) 311.537
CNS0095595Whole white alabastrum(diploid) 220.020
CNS0095596Whole white alabastrum(diploid) 318.897
CNS0095597Whole white alabastrum(diploid) 418.783
CNS0095598Silvery flower (diploied) 111.853
CNS0095599Silvery flower (diploied) 28.647
CNS0095600Silvery flower (diploied) 322.252
CNS0095601Golden flower (diploid) 18.331
CNS0095602Golden flower (diploid) 216.824
CNS0095603Golden flower (diploid) 315.593
CNS0095604Slightly white alabastrum(tetraploid) 121.245
CNS0095605Slightly white alabastrum(tetraploid) 217.071
CNS0095606Slightly white alabastrum(tetraploid) 325.237
CNS0095607Whole white alabastrum(tetraploid) 119.748
CNS0095608Whole white alabastrum(tetraploid) 223.191
CNS0095609Whole white alabastrum(tetraploid) 323.800
CNS0095610Silvery flower (tetraploid) 119.148
CNS0095611Silvery flower (tetraploid) 217.128
CNS0095612Silvery flower (tetraploid) 320.245
CNS0095613Golden flower (tetraploid) 113.933
CNS0095614Golden flower (tetraploid) 219.797
CNS0095615Golden flower (tetraploid) 316.282
CRA001975CRR073297Stem 120.590
CRR073298Stem 222.474
CRR073299Stem 318.702
CRR073300Leaf 131.663
CRR073301Leaf 228.951
CRR073302Leaf 322.680
CRR073303Juvenile bud 132.159
CRR073304Juvenile bud 229.285
CRR073305Juvenile bud 331.063
CRR073306Third green 123.672
CRR073307Third green 216.593
CRR073308Third green 325.366
CRR073309Second white 118.802
CRR073310Second white 219.909
CRR073311Second white 320.823
CRR073312Silver flowering 116.437
CRR073313Silver flowering 214.224
CRR073314Silver flowering 314.171
CRR073315Gold flowering 119.988
CRR073316Gold flowering 226.041
CRR073317Gold flowering 321.812
CRR073318Tawny withering 123.470
CRR073319Tawny withering 216.440
CRR073320Tawny withering 318.706