Gene detail

Detail information of GWHGAAZE005679

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008241385.1	0	PREDICTED: probable pectate lyase 12 [Prunus mume]
Swissprot	tr\|Q9SCP2\|PLY12_ARATH	0	Probable pectate lyase 12 (Precursor)
trEMBL	tr\|M5W1S7\|M5W1S7_PRUPE	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT3G53190.1	2E-175	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11897170	11898862	+
GWHAAZE00000002	mRNA	11897170	11898862	+
GWHAAZE00000002	exon	11897170	11898045	+
GWHAAZE00000002	exon	11898247	11898449	+
GWHAAZE00000002	exon	11898646	11898862	+
GWHAAZE00000002	CDS	11897170	11898045	+
GWHAAZE00000002	CDS	11898247	11898449	+
GWHAAZE00000002	CDS	11898646	11898862	+

Transcript Sequence
>GWHTAAZE005687 ATGATATCATACTCCACAAGTGACCACTCAACCTCTTGCCAAAACTCCAACCCCATAGATGACTGCTGGCGGTGCGACTCAAACTGGCAGCTAAACCGCCAGCGCCTAGCTGACTGTGGCATTGGCTTCGGCCAATACGCCCTTGGCGGCAAAGGTGGACGTTTCTACGTAGTTACCGACTCCTCTGACCACGATCCAGTGAATCCCTCCCCAGGGACCTTACGGTACGCTGTGATCCAAACCGAGCCTCTCTGGATCGTCTTTGCCACCAACATGCTCATCCACCTCTCCCAAGAACTCATCTTCAACAGCTACAAAACCTTAGATGGCCGCGGCGCTAACGTGCACATTGTGGGTGGTGGGTGCATCACACTTCAGTACATTAGTAATGTCATCATCCACAACATACACATACACCACTGTTATCAATCGGGCAACACTAACGTGCGGTCAAGCCCCACGCATTTTGGGTATAGGACGAAATCAGACGGTGATGGGATATCCATATTCGGATCAAGGGACATTTGGATTGATCATTGCACATTATCGCATTGTAAGGACGGCCTGATTGACGCGGTCATGGGGTCCACAGGGATCACGATATCAAATAACTTTTTTTCTCATCATAATGAAGTGATGTTACTTGGTCATAGCGACGATTATTTGCCAGACACAGGGATGCAAGTAACGATCGCATTTAATCATTTCGGACAAAAATTAATACAGAGGATGCCACGGTGCAGAAGGGGGTATATACATGTGGTGAATAATGACTATACCAGATGGGAAATGTACGCAATTGGAGGGAGTGGAAATCCTACCATTAACAGCCAAGGGAATCGGTACACTGCGCCCTCAGATCGCAATGCCAAAGAGGTAACAAAAAGGGTGGATACAGCAACAGCTAAGTGGATGGACTGGAACTGGAGGAGTGAGGGGGACATAATGGTAAATGGAGCCTACTTTGTGGCATCTGGTGAGGGAGTTGAGGTTAAATACGAGAAGGCTTACAGTGTGGAGCCCAAATCTGCTGTTCTCATTGACCAACTTACCATGAATGCTGGTGTCCTCGGTTCCAGGGGTAACAACCTGGGCAAGTGGACTAGTGGAGGAAACAATGGTGATGGGACCGGGTTTGGATCAGATTCGGGTAATATCAACGACTACAATGACGAGGATGATGATACGAGCAATGCGCTGCGGCGAACTTCCTCTAAATCCATTTTCTCCTCTTTTCTAATTTCATTCTCTTCTTTGTTGTTCTTGTTTCTCAACAAAAGGCCCATCCTATTGTAA

Network for GWHGAAZE005679

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	101	280	2.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.455
	SRR3591706	second leaf	3.716
	SRR3591707	mature leaf	0.401
	SRR3591708	Shoot apex	38.408
	SRR3591709	Stem	22.052
	SRR3591710	White floral bud	3.800
	SRR3591711	White flower	0.805
	SRR3591712	Green floral bud	7.769
	SRR3591713	Yellow flower	0.085
SRP173429	SRR8316895	Juvenile bud stage	2.079
	SRR8316896	Juvenile bud stage	1.283
	SRR8316897	Juvenile bud stage	0.572
	SRR8316894	Third green stage	0.514
	SRR8316900	Third green stage	1.665
	SRR8316901	Third green stage	2.298
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.740
	SRR8316903	Complete white stage	0.205
	SRR8316902	Silver flowering stage	0.075
	SRR8316904	Silver flowering stage	0.038
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.039
SRP132670	SRR6706286	Control	0.938
	SRR6706287	Light intensity 50%	0.779
	SRR6706288	Light intensity 20%	0.620
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.610
	CNS0095593	Slightly white alabastrum(diploid) 2	6.606
	CNS0095594	Slightly white alabastrum(diploid) 3	5.431
	CNS0095595	Whole white alabastrum(diploid) 2	7.544
	CNS0095596	Whole white alabastrum(diploid) 3	5.786
	CNS0095597	Whole white alabastrum(diploid) 4	4.099
	CNS0095598	Silvery flower (diploied) 1	1.186
	CNS0095599	Silvery flower (diploied) 2	3.490
	CNS0095600	Silvery flower (diploied) 3	1.086
	CNS0095601	Golden flower (diploid) 1	1.180
	CNS0095602	Golden flower (diploid) 2	1.093
	CNS0095603	Golden flower (diploid) 3	0.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.836
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.976
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.069
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.786
	CNS0095612	Silvery flower (tetraploid) 3	0.474
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.121
	CNS0095615	Golden flower (tetraploid) 3	0.246
CRA001975	CRR073297	Stem 1	4.752
	CRR073298	Stem 2	3.346
	CRR073299	Stem 3	7.347
	CRR073300	Leaf 1	1.742
	CRR073301	Leaf 2	1.942
	CRR073302	Leaf 3	1.092
	CRR073303	Juvenile bud 1	0.538
	CRR073304	Juvenile bud 2	0.299
	CRR073305	Juvenile bud 3	0.185
	CRR073306	Third green 1	0.067
	CRR073307	Third green 2	0.120
	CRR073308	Third green 3	0.196
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.182
	CRR073311	Second white 3	0.089
	CRR073312	Silver flowering 1	0.128
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.042
	CRR073315	Gold flowering 1	0.930
	CRR073316	Gold flowering 2	0.447
	CRR073317	Gold flowering 3	0.680
	CRR073318	Tawny withering 1	57.180
	CRR073319	Tawny withering 2	26.174
	CRR073320	Tawny withering 3	65.622