Detail information of GWHGAAZE005679


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008241385.10PREDICTED: probable pectate lyase 12 [Prunus mume]
Swissprottr|Q9SCP2|PLY12_ARATH0Probable pectate lyase 12 (Precursor)
trEMBLtr|M5W1S7|M5W1S7_PRUPE0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT3G53190.12E-175Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1189717011898862+
GWHAAZE00000002mRNA1189717011898862+
GWHAAZE00000002exon1189717011898045+
GWHAAZE00000002exon1189824711898449+
GWHAAZE00000002exon1189864611898862+
GWHAAZE00000002CDS1189717011898045+
GWHAAZE00000002CDS1189824711898449+
GWHAAZE00000002CDS1189864611898862+
Transcript Sequence

Network for GWHGAAZE005679

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41012802.10E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005679.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055606570Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.455
SRR3591706second leaf3.716
SRR3591707mature leaf0.401
SRR3591708Shoot apex38.408
SRR3591709Stem22.052
SRR3591710White floral bud3.800
SRR3591711White flower0.805
SRR3591712Green floral bud7.769
SRR3591713Yellow flower0.085
SRP173429 SRR8316895Juvenile bud stage 2.079
SRR8316896Juvenile bud stage 1.283
SRR8316897Juvenile bud stage 0.572
SRR8316894Third green stage 0.514
SRR8316900Third green stage 1.665
SRR8316901Third green stage 2.298
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.740
SRR8316903Complete white stage 0.205
SRR8316902Silver flowering stage0.075
SRR8316904Silver flowering stage0.038
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.105
SRR8316908Gold flowering stage 0.039
SRP132670SRR6706286Control0.938
SRR6706287Light intensity 50%0.779
SRR6706288Light intensity 20%0.620
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.610
CNS0095593Slightly white alabastrum(diploid) 26.606
CNS0095594Slightly white alabastrum(diploid) 35.431
CNS0095595Whole white alabastrum(diploid) 27.544
CNS0095596Whole white alabastrum(diploid) 35.786
CNS0095597Whole white alabastrum(diploid) 44.099
CNS0095598Silvery flower (diploied) 11.186
CNS0095599Silvery flower (diploied) 23.490
CNS0095600Silvery flower (diploied) 31.086
CNS0095601Golden flower (diploid) 11.180
CNS0095602Golden flower (diploid) 21.093
CNS0095603Golden flower (diploid) 30.767
CNS0095604Slightly white alabastrum(tetraploid) 113.836
CNS0095605Slightly white alabastrum(tetraploid) 214.108
CNS0095606Slightly white alabastrum(tetraploid) 36.976
CNS0095607Whole white alabastrum(tetraploid) 112.833
CNS0095608Whole white alabastrum(tetraploid) 28.381
CNS0095609Whole white alabastrum(tetraploid) 35.069
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.786
CNS0095612Silvery flower (tetraploid) 30.474
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.121
CNS0095615Golden flower (tetraploid) 30.246
CRA001975CRR073297Stem 14.752
CRR073298Stem 23.346
CRR073299Stem 37.347
CRR073300Leaf 11.742
CRR073301Leaf 21.942
CRR073302Leaf 31.092
CRR073303Juvenile bud 10.538
CRR073304Juvenile bud 20.299
CRR073305Juvenile bud 30.185
CRR073306Third green 10.067
CRR073307Third green 20.120
CRR073308Third green 30.196
CRR073309Second white 10.000
CRR073310Second white 20.182
CRR073311Second white 30.089
CRR073312Silver flowering 10.128
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.042
CRR073315Gold flowering 10.930
CRR073316Gold flowering 20.447
CRR073317Gold flowering 30.680
CRR073318Tawny withering 157.180
CRR073319Tawny withering 226.174
CRR073320Tawny withering 365.622