Gene detail

Detail information of GWHGAAZE005674

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011094578.1	PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 9-like [Sesamum indicum]
Swissprot	tr\|Q8L850\|PI5K9_ARATH	Phosphatidylinositol 4-phosphate 5-kinase 9
trEMBL	tr\|A0A068V3D9\|A0A068V3D9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313\|EMBL:CDP15295.1}
TAIR10	AT3G09920.3	phosphatidyl inositol monophosphate 5 kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11777562	11781939	+
GWHAAZE00000002	mRNA	11777562	11781939	+
GWHAAZE00000002	exon	11777562	11778856	+
GWHAAZE00000002	exon	11778959	11779126	+
GWHAAZE00000002	exon	11779639	11779804	+
GWHAAZE00000002	exon	11780042	11780152	+
GWHAAZE00000002	exon	11780315	11780502	+
GWHAAZE00000002	exon	11780712	11780869	+
GWHAAZE00000002	exon	11781323	11781485	+
GWHAAZE00000002	exon	11781663	11781939	+
GWHAAZE00000002	CDS	11777562	11778856	+
GWHAAZE00000002	CDS	11778959	11779126	+
GWHAAZE00000002	CDS	11779639	11779804	+
GWHAAZE00000002	CDS	11780042	11780152	+
GWHAAZE00000002	CDS	11780315	11780502	+
GWHAAZE00000002	CDS	11780712	11780869	+
GWHAAZE00000002	CDS	11781323	11781485	+
GWHAAZE00000002	CDS	11781663	11781939	+

Transcript Sequence
>GWHTAAZE005682 ATGTCTGGCCCTCTAGCTATTGTTGATAATGTTGATGGTGCTCTTTCGGTGTCAAATGGGACAGGTCTTTCTTTGACAAATAGGACAAAGTCTATTGATGCCATTTCATTCCGTAACAATGACCATCCAAACGAACTAACTGTTGGAGAAGTTGCACGTTCTTCATCAGAAACCATTGGCTTTAGAGTTGGAGAGCTCTTACTGTTGAATGGGGAATTTTATTCTGGGTCACTACTTGGTAATGTACCTGAAGGTTTCGGCAAGTATTTCTGGTCAGATGGCTGCAAATATGAGGGTGAATGGAGACGGGGGGTGAGGCACGGATATGGCAAACTTCATTGGCCTTCTGGAGCTAGTTATGAAGGTGACTTTTCCGGGGGTTATATGTTTGGCACTGGGACATATATTAGGCCCAATAAAATGACTTATAGGGGACGGTGGCGATTGAGTCTCAAACATGGGTTAGGATATCAAGTTTACCCAAATGGTGATGTATTTGAAGGAGCCTGGATCCAGGGAACCCCAGAAGGGCCGGGAAAGTATACCTGGATTAATGGAAATGTTTATTTGGGCAATATGAAAGGAGGGAAAATGTCGGGGAAAGGAACACTTACTTGGACCAATGGAGATTCATATGAAGGAAGCTGGTTAAATGGCATGATGCATGGATTTGGAGTATACACGTGGAGTGATAGTGGCTGCTACGTTGGAACTTGGACACGGGGCCTGAAGGATGGAAAAGGATCATTTTATCCAAGAGGCAGCAGGTTTCTTGTAGTAGAAGAACTGTACCTTAAGGCTCTGAGAAAACGAGGTTTGCTGCCAGATTTAAGGAAACTTAATCAAATTTCACGTAGTCAACATGCTTCTTCAGTTGACATGGGGAATTTCAAGGTTGGTGGGAACCAAGGATCGCGTCGTAATTCATCTGATAAGCTATCCCAGGGGAACCTGTTAAATCTGGAGCAGTCTCGCAATACAAGTGTTTCTCTTGAAAGACGCTGGAGTCTTGAGGTTGCTATTGAGAATGTAATTGGGCATGATCTATCACTGGATATGTCCGAGACTGGTTTAGATGGCGAAGAAAGTGAGGCCAATGCAAATGCTCCAATACTTGAAAGAGAATACATGCAAGGTGTTTTAATCAGTGAGCTTGTGTTAAACAAAAGCTTTTCATCTTTGAAACGAGCAAAAAGGAGACAAAAGAGGCTTCAGGAGGTAAAGAGGCCCGGTGAAACTATCATTAAGGGTCACAGGAGTTATGATTTAATGCTCAGTTTGCAGCTTGGAATCAGATATACTGTCGGGAAAATTACTCCAATACCAAGGCGAGAAGTACGGACTTCAGATTATGGCCCCCGTGCCAGCTTCTGGATGAATTTTCCTAAGGAAGGGTCCCAATTGACACCGCCTCATCAGTCAGAAGATTTTAGGTGGAAATGTTACTCTCCAATGGTTTTTAGGAACTTGAGGGAGATGTTCAAGCTCGATGCTGCTGACTACATGATGTCCATTTGTGGAAATGATGGTCTTAGGGAACTTTCTTCTCCCGGGAAAAGTGGCAGTGTCTTTTTCCTGTCTCAAGATGACCGTTTCATGATTAAGACGCTTCGAAAATCTGAAGTCATGGTTCTTCTGCGGATGCTTCCAGACTACTTCCATCATGTTCGGACGTATGACAACACACTAATAACTAAATTTTTTGGTCTTCACAGGATAAAACCTTCAAGTGGCCAAAAGTTTCGGTTTGTAGTAATGGGAAATATGTTCTGCACAGAATTAAGGATCCATCGAAGATTTGATTTGAAAGGTTCCTCACTTGGGCGTTCCACAAACAAAGTTGAAATTGATGAGACCACAACACTCAAGGATCTTGATTTAAACTACTGCTTTTACTTGGAACCTTTGTGGCGTAATGCTCTGTTAAAGCAGATTGAGATAGACAGTAAATTTTTGGAAGCACAGAACATTATGGATTATAGCCTCTTGCTCGGCGTTCATTATCGAGCCCCCCAACAACTGCGATCCCTTATGTCTTATGGGCGACGTATAACAGCAGATGGGCTGGGAATTGTTGCCGAAGAAGAGTCTATGGAGGATGGGATATCTCCGCAAGGCCTTGTTTTGGTTCCTTGTGGGAGCGGGGATAATAGTGTCATTGTGGGCCCTCATATCAGAGGTAGCCGTTTGCGAACATCATCAGCTACTGGTGATGAGGAAGTGGATCTACTTCTTCCTGGTACAGCAAGGCTCCAAATCCAGCTTGGAGTGAATATGCCAGCAAGAGCAGAGCATATTCCAGGAGAAGATGAAACAGAGATTTTTCACGAGGCATATGATGTTGTATTGTATTTAGGTGTCATTGACATATTGCAAGAGTACAACATACATAAGAAGATCGAGCATGCATATAAATCTTTTCAATTTGATTCTATTTCTATCTCTGCAGTGGACCCAACGTTCTACTCAAACCGTTTTTTGGAATTTATTCAGAAGGTATTCCCTCCCAATTCTGTAGCAAGTTAG

Network for GWHGAAZE005674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02493.21	MORN	74	95	0.021
PF02493.21	MORN	97	118	9.30E-09
PF02493.21	MORN	120	140	0.085
PF02493.21	MORN	143	165	0.013
PF02493.21	MORN	166	188	0.00021
PF02493.21	MORN	189	210	0.00022
PF02493.21	MORN	212	232	8.90E-08
PF02493.21	MORN	235	256	0.0093
PF01504.19	PIP5K	508	832	3.10E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00889	PIP5K	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		MAPK signaling pathway - yeast	map04011
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Mitophagy - yeast	map04139
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity
GO:0005524	molecular_function	ATP binding
GO:0016308	molecular_function	1-phosphatidylinositol-4-phosphate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.294
	SRR3591706	second leaf	10.367
	SRR3591707	mature leaf	10.351
	SRR3591708	Shoot apex	13.749
	SRR3591709	Stem	48.127
	SRR3591710	White floral bud	25.724
	SRR3591711	White flower	12.667
	SRR3591712	Green floral bud	15.417
	SRR3591713	Yellow flower	7.597
SRP173429	SRR8316895	Juvenile bud stage	6.341
	SRR8316896	Juvenile bud stage	8.980
	SRR8316897	Juvenile bud stage	2.982
	SRR8316894	Third green stage	4.460
	SRR8316900	Third green stage	11.010
	SRR8316901	Third green stage	11.829
	SRR8316898	Complete white stage	4.838
	SRR8316899	Complete white stage	21.151
	SRR8316903	Complete white stage	9.189
	SRR8316902	Silver flowering stage	3.379
	SRR8316904	Silver flowering stage	4.675
	SRR8316905	Silver flowering stage	2.362
	SRR8316906	Gold flowering stage	7.655
	SRR8316907	Gold flowering stage	6.308
	SRR8316908	Gold flowering stage	6.498
SRP132670	SRR6706286	Control	8.976
	SRR6706287	Light intensity 50%	10.190
	SRR6706288	Light intensity 20%	10.959
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.446
	CNS0095593	Slightly white alabastrum(diploid) 2	4.478
	CNS0095594	Slightly white alabastrum(diploid) 3	6.330
	CNS0095595	Whole white alabastrum(diploid) 2	5.835
	CNS0095596	Whole white alabastrum(diploid) 3	3.689
	CNS0095597	Whole white alabastrum(diploid) 4	5.675
	CNS0095598	Silvery flower (diploied) 1	7.398
	CNS0095599	Silvery flower (diploied) 2	7.478
	CNS0095600	Silvery flower (diploied) 3	8.477
	CNS0095601	Golden flower (diploid) 1	6.320
	CNS0095602	Golden flower (diploid) 2	6.783
	CNS0095603	Golden flower (diploid) 3	7.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.651
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.484
	CNS0095610	Silvery flower (tetraploid) 1	10.942
	CNS0095611	Silvery flower (tetraploid) 2	9.039
	CNS0095612	Silvery flower (tetraploid) 3	5.122
	CNS0095613	Golden flower (tetraploid) 1	1.747
	CNS0095614	Golden flower (tetraploid) 2	6.212
	CNS0095615	Golden flower (tetraploid) 3	2.543
CRA001975	CRR073297	Stem 1	7.660
	CRR073298	Stem 2	6.588
	CRR073299	Stem 3	5.073
	CRR073300	Leaf 1	10.713
	CRR073301	Leaf 2	10.055
	CRR073302	Leaf 3	5.364
	CRR073303	Juvenile bud 1	8.956
	CRR073304	Juvenile bud 2	8.665
	CRR073305	Juvenile bud 3	10.804
	CRR073306	Third green 1	1.285
	CRR073307	Third green 2	1.666
	CRR073308	Third green 3	1.569
	CRR073309	Second white 1	1.832
	CRR073310	Second white 2	1.054
	CRR073311	Second white 3	0.554
	CRR073312	Silver flowering 1	0.268
	CRR073313	Silver flowering 2	0.684
	CRR073314	Silver flowering 3	0.271
	CRR073315	Gold flowering 1	7.015
	CRR073316	Gold flowering 2	13.888
	CRR073317	Gold flowering 3	6.351
	CRR073318	Tawny withering 1	9.044
	CRR073319	Tawny withering 2	7.169
	CRR073320	Tawny withering 3	8.684