Detail information of GWHGAAZE005664


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009334653.10PREDICTED: cell division control protein 48 homolog D [Pyrus x bretschneideri]
Swissprottr|P54774|CDC48_SOYBN0Cell division cycle protein 48 homolog
trEMBLtr|D7TQP5|D7TQP5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32765.3}
TAIR10AT3G53230.10ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1165077011655223-
GWHAAZE00000002mRNA1165077011655223-
GWHAAZE00000002exon1165077011651069-
GWHAAZE00000002exon1165117811651537-
GWHAAZE00000002exon1165163111651912-
GWHAAZE00000002exon1165203711652108-
GWHAAZE00000002exon1165219411652415-
GWHAAZE00000002exon1165250811653274-
GWHAAZE00000002exon1165339811653626-
GWHAAZE00000002exon1165493311655098-
GWHAAZE00000002exon1165519211655223-
GWHAAZE00000002CDS1165519211655223-
GWHAAZE00000002CDS1165493311655098-
GWHAAZE00000002CDS1165339811653626-
GWHAAZE00000002CDS1165250811653274-
GWHAAZE00000002CDS1165219411652415-
GWHAAZE00000002CDS1165203711652108-
GWHAAZE00000002CDS1165163111651912-
GWHAAZE00000002CDS1165117811651537-
GWHAAZE00000002CDS1165077011651069-
Transcript Sequence

Network for GWHGAAZE005664

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160GO:0009331 glycerol-3-phosphate dehydrogenase complex GOslim:cellular_component
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GOslim:molecular_function
GO:0006072 glycerol-3-phosphate metabolic process GOslim:biological_process
map01200 Carbon metabolism
map04260 Cardiac muscle contraction
map01110 Biosynthesis of secondary metabolites
map01120 Microbial metabolism in diverse environments
map00190 Oxidative phosphorylation
map01100 Metabolic pathways
map04714 Thermogenesis
GO:0006096 glycolytic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map00020 Citrate cycle
map02020 Two-component system
map00564 Glycerophospholipid metabolism
GO:0055114 oxidation-reduction process GOslim:biological_process
map00010 Glycolysis / Gluconeogenesis
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0008121 ubiquinol-cytochrome-c reductase activity GOslim:molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity GOslim:molecular_function
GO:0000287 magnesium ion binding GOslim:molecular_function
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
GO:0004332 fructose-bisphosphate aldolase activity GOslim:molecular_function
GO:0048037 cofactor binding GOslim:molecular_function
GO:0003824 catalytic activity GOslim:molecular_function
GO:0004743 pyruvate kinase activity GOslim:molecular_function
GO:0030955 potassium ion binding GOslim:molecular_function
CFinderModule0293map04141 Protein processing in endoplasmic reticulum
GO:0016787 hydrolase activity GOslim:molecular_function
map04137 Mitophagy - animal
map04146 Peroxisome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02359.19CDC48_N311121.40E-22
PF02933.18CDC48_21331964.00E-11
PF00004.30AAA2463752.30E-47
PF17862.2AAA_lid_33984403.50E-15
PF00004.30AAA5196522.00E-46
PF17862.2AAA_lid_36747142.20E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13525VCP, CDC48 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf126.958
SRR3591706second leaf63.792
SRR3591707mature leaf57.672
SRR3591708Shoot apex66.354
SRR3591709Stem126.727
SRR3591710White floral bud180.317
SRR3591711White flower285.992
SRR3591712Green floral bud143.317
SRR3591713Yellow flower189.676
SRP173429 SRR8316895Juvenile bud stage 83.416
SRR8316896Juvenile bud stage 129.632
SRR8316897Juvenile bud stage 54.681
SRR8316894Third green stage 64.983
SRR8316900Third green stage 211.778
SRR8316901Third green stage 190.985
SRR8316898Complete white stage 99.845
SRR8316899Complete white stage 234.265
SRR8316903Complete white stage 174.717
SRR8316902Silver flowering stage130.860
SRR8316904Silver flowering stage172.723
SRR8316905Silver flowering stage91.012
SRR8316906Gold flowering stage 343.308
SRR8316907Gold flowering stage 328.931
SRR8316908Gold flowering stage 354.285
SRP132670SRR6706286Control176.077
SRR6706287Light intensity 50%195.651
SRR6706288Light intensity 20%210.900
CNP0000432CNS0095592Slightly white alabastrum(diploid) 189.631
CNS0095593Slightly white alabastrum(diploid) 2104.513
CNS0095594Slightly white alabastrum(diploid) 381.084
CNS0095595Whole white alabastrum(diploid) 291.264
CNS0095596Whole white alabastrum(diploid) 382.173
CNS0095597Whole white alabastrum(diploid) 483.557
CNS0095598Silvery flower (diploied) 171.803
CNS0095599Silvery flower (diploied) 273.726
CNS0095600Silvery flower (diploied) 3226.754
CNS0095601Golden flower (diploid) 170.241
CNS0095602Golden flower (diploid) 2183.867
CNS0095603Golden flower (diploid) 3168.202
CNS0095604Slightly white alabastrum(tetraploid) 1105.638
CNS0095605Slightly white alabastrum(tetraploid) 281.775
CNS0095606Slightly white alabastrum(tetraploid) 3181.801
CNS0095607Whole white alabastrum(tetraploid) 164.127
CNS0095608Whole white alabastrum(tetraploid) 262.798
CNS0095609Whole white alabastrum(tetraploid) 3157.396
CNS0095610Silvery flower (tetraploid) 1255.881
CNS0095611Silvery flower (tetraploid) 2211.040
CNS0095612Silvery flower (tetraploid) 3209.983
CNS0095613Golden flower (tetraploid) 1129.120
CNS0095614Golden flower (tetraploid) 2175.366
CNS0095615Golden flower (tetraploid) 3248.869
CRA001975CRR073297Stem 1192.734
CRR073298Stem 2189.195
CRR073299Stem 3223.421
CRR073300Leaf 1314.075
CRR073301Leaf 2265.431
CRR073302Leaf 3293.764
CRR073303Juvenile bud 1372.982
CRR073304Juvenile bud 2317.454
CRR073305Juvenile bud 3462.686
CRR073306Third green 1331.053
CRR073307Third green 2269.151
CRR073308Third green 3282.874
CRR073309Second white 1506.173
CRR073310Second white 2396.283
CRR073311Second white 3374.352
CRR073312Silver flowering 1310.344
CRR073313Silver flowering 2382.051
CRR073314Silver flowering 3297.848
CRR073315Gold flowering 1130.755
CRR073316Gold flowering 2183.176
CRR073317Gold flowering 3164.075
CRR073318Tawny withering 1173.949
CRR073319Tawny withering 2122.382
CRR073320Tawny withering 3154.439