Detail information of GWHGAAZE005647


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO50670.10hypothetical protein CISIN_1g017413mg [Citrus sinensis]
Swissprottr|Q945K7|IDH5_ARATH0Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial (Precursor)
trEMBLtr|A0A067E9Z4|A0A067E9Z4_CITSI0Isocitrate dehydrogenase [NAD] subunit, mitochondrial {ECO:0000256|RuleBase:RU361266}
TAIR10AT5G03290.10isocitrate dehydrogenase V

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1144191311448646+
GWHAAZE00000002mRNA1144191311448646+
GWHAAZE00000002exon1144191311442122+
GWHAAZE00000002exon1144361711443937+
GWHAAZE00000002exon1144402511444186+
GWHAAZE00000002exon1144426311444337+
GWHAAZE00000002exon1144455811444667+
GWHAAZE00000002exon1144478911444861+
GWHAAZE00000002exon1144845511448646+
GWHAAZE00000002CDS1144191311442122+
GWHAAZE00000002CDS1144361711443937+
GWHAAZE00000002CDS1144402511444186+
GWHAAZE00000002CDS1144426311444337+
GWHAAZE00000002CDS1144455811444667+
GWHAAZE00000002CDS1144478911444861+
GWHAAZE00000002CDS1144845511448646+
Transcript Sequence

Network for GWHGAAZE005647

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160GO:0009331 glycerol-3-phosphate dehydrogenase complex GOslim:cellular_component
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GOslim:molecular_function
GO:0006072 glycerol-3-phosphate metabolic process GOslim:biological_process
map01200 Carbon metabolism
map04260 Cardiac muscle contraction
map01110 Biosynthesis of secondary metabolites
map01120 Microbial metabolism in diverse environments
map00190 Oxidative phosphorylation
map01100 Metabolic pathways
map04714 Thermogenesis
GO:0006096 glycolytic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map00020 Citrate cycle
map02020 Two-component system
map00564 Glycerophospholipid metabolism
GO:0055114 oxidation-reduction process GOslim:biological_process
map00010 Glycolysis / Gluconeogenesis
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0008121 ubiquinol-cytochrome-c reductase activity GOslim:molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity GOslim:molecular_function
GO:0000287 magnesium ion binding GOslim:molecular_function
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
GO:0004332 fructose-bisphosphate aldolase activity GOslim:molecular_function
GO:0048037 cofactor binding GOslim:molecular_function
GO:0003824 catalytic activity GOslim:molecular_function
GO:0004743 pyruvate kinase activity GOslim:molecular_function
GO:0030955 potassium ion binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.21Iso_dh533761.30E-106
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006099biological_processtricarboxylic acid cycle
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004449molecular_functionisocitrate dehydrogenase (NAD+) activity
GO:0000287molecular_functionmagnesium ion binding
GO:0051287molecular_functionNAD binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005647.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300255075125150175225250275Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf126.990
SRR3591706second leaf58.914
SRR3591707mature leaf50.010
SRR3591708Shoot apex69.587
SRR3591709Stem87.836
SRR3591710White floral bud110.543
SRR3591711White flower130.928
SRR3591712Green floral bud146.328
SRR3591713Yellow flower118.966
SRP173429 SRR8316895Juvenile bud stage 65.169
SRR8316896Juvenile bud stage 115.354
SRR8316897Juvenile bud stage 57.658
SRR8316894Third green stage 51.808
SRR8316900Third green stage 169.586
SRR8316901Third green stage 166.003
SRR8316898Complete white stage 77.536
SRR8316899Complete white stage 138.790
SRR8316903Complete white stage 98.343
SRR8316902Silver flowering stage72.335
SRR8316904Silver flowering stage104.563
SRR8316905Silver flowering stage51.690
SRR8316906Gold flowering stage 154.389
SRR8316907Gold flowering stage 175.088
SRR8316908Gold flowering stage 176.768
SRP132670SRR6706286Control138.568
SRR6706287Light intensity 50%144.939
SRR6706288Light intensity 20%155.961
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1106.170
CNS0095593Slightly white alabastrum(diploid) 293.037
CNS0095594Slightly white alabastrum(diploid) 3114.103
CNS0095595Whole white alabastrum(diploid) 2102.403
CNS0095596Whole white alabastrum(diploid) 3116.832
CNS0095597Whole white alabastrum(diploid) 4105.100
CNS0095598Silvery flower (diploied) 157.083
CNS0095599Silvery flower (diploied) 257.311
CNS0095600Silvery flower (diploied) 3157.083
CNS0095601Golden flower (diploid) 152.540
CNS0095602Golden flower (diploid) 2120.113
CNS0095603Golden flower (diploid) 3114.650
CNS0095604Slightly white alabastrum(tetraploid) 1121.745
CNS0095605Slightly white alabastrum(tetraploid) 2110.573
CNS0095606Slightly white alabastrum(tetraploid) 399.930
CNS0095607Whole white alabastrum(tetraploid) 1115.826
CNS0095608Whole white alabastrum(tetraploid) 2123.076
CNS0095609Whole white alabastrum(tetraploid) 3125.128
CNS0095610Silvery flower (tetraploid) 1142.350
CNS0095611Silvery flower (tetraploid) 2145.956
CNS0095612Silvery flower (tetraploid) 3142.716
CNS0095613Golden flower (tetraploid) 168.565
CNS0095614Golden flower (tetraploid) 2110.521
CNS0095615Golden flower (tetraploid) 392.974
CRA001975CRR073297Stem 1113.856
CRR073298Stem 2114.807
CRR073299Stem 3138.790
CRR073300Leaf 1150.842
CRR073301Leaf 2154.476
CRR073302Leaf 3188.409
CRR073303Juvenile bud 1213.599
CRR073304Juvenile bud 2211.423
CRR073305Juvenile bud 3189.197
CRR073306Third green 1183.433
CRR073307Third green 2191.936
CRR073308Third green 3170.433
CRR073309Second white 1273.111
CRR073310Second white 2165.882
CRR073311Second white 3140.989
CRR073312Silver flowering 1176.331
CRR073313Silver flowering 2211.506
CRR073314Silver flowering 3160.713
CRR073315Gold flowering 177.421
CRR073316Gold flowering 280.506
CRR073317Gold flowering 384.770
CRR073318Tawny withering 1129.603
CRR073319Tawny withering 2110.523
CRR073320Tawny withering 3121.862