Gene detail

Detail information of GWHGAAZE005630

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077353.1	0	PREDICTED: dnaJ protein P58IPK homolog [Sesamum indicum]
Swissprot	tr\|Q9LYW9\|DNJ36_ARATH	0	DnaJ protein P58IPK homolog (Precursor)
trEMBL	tr\|M5WH85\|M5WH85_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ08618.1}
TAIR10	AT5G03160.1	5E-155	homolog of mamallian P58IPK

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11091367	11095332	+
GWHAAZE00000002	mRNA	11091367	11095332	+
GWHAAZE00000002	exon	11091367	11091499	+
GWHAAZE00000002	exon	11092401	11092566	+
GWHAAZE00000002	exon	11093686	11093887	+
GWHAAZE00000002	exon	11093984	11094144	+
GWHAAZE00000002	exon	11094268	11094361	+
GWHAAZE00000002	exon	11094440	11094652	+
GWHAAZE00000002	exon	11094755	11094835	+
GWHAAZE00000002	exon	11095102	11095332	+
GWHAAZE00000002	CDS	11091367	11091499	+
GWHAAZE00000002	CDS	11092401	11092566	+
GWHAAZE00000002	CDS	11093686	11093887	+
GWHAAZE00000002	CDS	11093984	11094144	+
GWHAAZE00000002	CDS	11094268	11094361	+
GWHAAZE00000002	CDS	11094440	11094652	+
GWHAAZE00000002	CDS	11094755	11094835	+
GWHAAZE00000002	CDS	11095102	11095332	+

Transcript Sequence
>GWHTAAZE005638 ATGGTGAATCTTTTAGGTTTCGCATCAGCCATGGATTTGGTAGCTTGGAGGGGCTTCCTTTTCACGATATTCATCCTGCATTTCGTATTTGTTTGCCAACTCCTACTCCTCCAACCATTGGTCTCTGCTCTAGATGGCAAACCTGGTGATGCTGCTAAATTATTTGAGAGGGTTTCACAAAATGTAAAGGTGAAACGTTATAGCGAAGCAATTAATGATCTTAATGCTGCTATCGAGGCAGACCCAACACTTTCAGAAGCATACTGGCATCGAGCATCTGTTCTTCGTCAGCTATGCAGATATGAGGAATCAGAGAACAGCTATAAGAAGTTTCTGGAGATGAAACCTGGGAACTCCGCCGTTGAGAAGGAGCTTTCTCAGCTGTATCAAGCCAAGAGTGCTCTTGATTCAGCTCTTAATCTATTCGAGTCAAAAGAGTATACGAAATCATTGGATTATGTTGACAAGATTGTACTAGTTTTTTCGCCGGCATGCTCAAAGGCCAAACTCCTTAAAGTGAAGTTATTGTTAGCTGCGAAAGATTATGCAGCTGCCATCTCTGAGACAGGATATATTCTCAAAGAGGATGAAGATAATTTAGAGGCACTGCTCCTACGTGGTCGAGCATACTATTATTTAGCTGATCACGATGTTGCTATAAGGCATTTCCAGAAGGGTCTCCGCTCAGACCCAGAGCATGGTGAACTGAAGAAAGCATATTTTGGACTGAAAAATTTACTGAAGAAGACTAAAAGTGCTGAAGACAACTCAAGTAAGGGTAAGCTGCGCCTGGCTGTGGAGGATTATAAAGCAGCCCTTGCTTTGGACCCTAATCATGTTGCACACAATGTGCATCTTCATCTTGGTTTATGTAAGGTCTTGGTCAAGCTTGGTAGAGGAAAGGATGCTTTAAGCAGTTGTACACAAGTGCTTGAGATTGATGAGGAGCTAGTTGAAGCTTTAGTTCAGAGGGGTGAAGCAAAACTTTTGATAGAAGATTGGGAGGGTGCTGTTGCAGATTTAAAATCAGCTGCTGAAAAATCACCTCAGGATATGAATATTCGTGAGGTGTTAATGAGGGCTGAGAAAGCTTTGAAGATGAGTCAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCAAAGACCGCATCTATGTCCGAGATTAAAAAGGCCTACAAGAGGCTTGCTTTGCAATGGCACCCAGATAAGAATGTTGACAATAGAGAAGAAGCAGAGGCCAAATTTCGAGAAATAGCTGCTGCATATGAGGTTCGGTTCTAG

Network for GWHGAAZE005630

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0322

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13432.7	TPR_16	63	118	0.00033
PF07719.18	TPR_2	201	233	3.70E-05
PF00226.32	DnaJ	372	424	1.30E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09523	DNAJC3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.027
	SRR3591706	second leaf	27.417
	SRR3591707	mature leaf	22.715
	SRR3591708	Shoot apex	30.433
	SRR3591709	Stem	25.234
	SRR3591710	White floral bud	36.468
	SRR3591711	White flower	38.286
	SRR3591712	Green floral bud	33.046
	SRR3591713	Yellow flower	97.740
SRP173429	SRR8316895	Juvenile bud stage	27.053
	SRR8316896	Juvenile bud stage	36.787
	SRR8316897	Juvenile bud stage	19.474
	SRR8316894	Third green stage	17.089
	SRR8316900	Third green stage	39.630
	SRR8316901	Third green stage	39.769
	SRR8316898	Complete white stage	18.441
	SRR8316899	Complete white stage	31.553
	SRR8316903	Complete white stage	31.279
	SRR8316902	Silver flowering stage	22.487
	SRR8316904	Silver flowering stage	40.254
	SRR8316905	Silver flowering stage	22.701
	SRR8316906	Gold flowering stage	61.769
	SRR8316907	Gold flowering stage	55.451
	SRR8316908	Gold flowering stage	44.629
SRP132670	SRR6706286	Control	23.428
	SRR6706287	Light intensity 50%	22.576
	SRR6706288	Light intensity 20%	21.961
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.150
	CNS0095593	Slightly white alabastrum(diploid) 2	30.156
	CNS0095594	Slightly white alabastrum(diploid) 3	37.467
	CNS0095595	Whole white alabastrum(diploid) 2	30.490
	CNS0095596	Whole white alabastrum(diploid) 3	32.240
	CNS0095597	Whole white alabastrum(diploid) 4	20.399
	CNS0095598	Silvery flower (diploied) 1	35.255
	CNS0095599	Silvery flower (diploied) 2	24.699
	CNS0095600	Silvery flower (diploied) 3	36.643
	CNS0095601	Golden flower (diploid) 1	16.048
	CNS0095602	Golden flower (diploid) 2	76.677
	CNS0095603	Golden flower (diploid) 3	78.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.867
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.276
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.372
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.638
	CNS0095610	Silvery flower (tetraploid) 1	38.865
	CNS0095611	Silvery flower (tetraploid) 2	25.029
	CNS0095612	Silvery flower (tetraploid) 3	21.878
	CNS0095613	Golden flower (tetraploid) 1	26.561
	CNS0095614	Golden flower (tetraploid) 2	34.704
	CNS0095615	Golden flower (tetraploid) 3	58.093
CRA001975	CRR073297	Stem 1	23.306
	CRR073298	Stem 2	24.541
	CRR073299	Stem 3	20.878
	CRR073300	Leaf 1	22.781
	CRR073301	Leaf 2	16.093
	CRR073302	Leaf 3	17.094
	CRR073303	Juvenile bud 1	17.215
	CRR073304	Juvenile bud 2	20.437
	CRR073305	Juvenile bud 3	17.912
	CRR073306	Third green 1	8.458
	CRR073307	Third green 2	9.559
	CRR073308	Third green 3	11.959
	CRR073309	Second white 1	16.447
	CRR073310	Second white 2	16.505
	CRR073311	Second white 3	14.431
	CRR073312	Silver flowering 1	46.635
	CRR073313	Silver flowering 2	51.861
	CRR073314	Silver flowering 3	57.728
	CRR073315	Gold flowering 1	12.144
	CRR073316	Gold flowering 2	17.985
	CRR073317	Gold flowering 3	8.674
	CRR073318	Tawny withering 1	16.019
	CRR073319	Tawny withering 2	10.692
	CRR073320	Tawny withering 3	15.267