Gene detail

Detail information of GWHGAAZE005629

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI32713.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q700D2\|IDD10_ARATH	6E-135	Zinc finger protein JACKDAW
trEMBL	tr\|F6HR11\|F6HR11_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57060.1}
TAIR10	AT5G03150.1	7E-95	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11073621	11075351	+
GWHAAZE00000002	mRNA	11073621	11075351	+
GWHAAZE00000002	exon	11073621	11073768	+
GWHAAZE00000002	exon	11073920	11074319	+
GWHAAZE00000002	exon	11074442	11075351	+
GWHAAZE00000002	CDS	11073621	11073768	+
GWHAAZE00000002	CDS	11073920	11074319	+
GWHAAZE00000002	CDS	11074442	11075351	+

Transcript Sequence
>GWHTAAZE005637 ATGCAAATGATGTCCGGGAACATGTTTTCCATTCCATCTTCCATCAAAGGGCTTCCTCAAGAACAAGACTCAAACCCTAACCCTAATAACCCTAAACCTAATTCAAACCCATCACAAAAGAAGAAGAGAAACCTTCCCGGAAACCCAGATCCAGATTCTGAAGTGATTGCTCTTTCCCCAAAGACCCTCATGGCTACGAATCGATTCGTTTGCGAGATTTGCAACAAGGGGTTTCAAAGAGACCAGAACTTGCAGCTTCACAGGAGAGGTCACAACCTTCCATGGAAGCTGAAGCAAAGGAGTAACAAAGAAGTGATCAAGAAGAAGGTTTATATTTGCCCTGAAAAGACCTGTGTCCACCATGACCCGTCTCGAGCCCTCGGCGACCTCACCGGAATAAAGAAACATTTCAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGAGAAATGTGCCAAAAAATATGCTGTTCAATCTGACTGGAAAGCTCATTCTAAGACTTGTGGAACTAGAGAGTACAAATGTGACTGTGGCACACTCTTTTCCAGGAAGGATAGTTTTATTACCCACAGAGCCTTCTGTGATGCTTTAGCAGAGGAGAGTGTAAGATTCACTTCAAGTGCTGCCAATAATCTCAACTTCCGAGATAATAGTTCTATGAACGACAACAACCCAATTAGCCCTCAACTTAACTTGCCCAATGGGTTCAATTCTGCTGCTTCAATTTCTCAATTCGGATTTAGTGGAGATCAACAGAAACCCAGATTGTCACTCTGGTTAGATCAAGCAGGCTCTCAGCTCAATCCCATGGATCAAATGGTTCCAAATTCAAACCCTTACATGTCCTCAAGTTCCACATGTTTACCCGAAATGGTTCAAATGCCATCAAATACTAATAATCCTTTTGGTTCGTCTTCATTGGGGCATTTTAACAACCAATTGGCGTGGACTGAACAAAGTTCGCCCAATTCTACCCCATCAACCCTCTCATTATCACAAAACAAAGGTACAACTTCCATCTCCGAAACGATAAATTGTTTGTACTCCGATCATCAAAACAACAAATCAAACCCTCCTGGACCAATGTCGGCCACAGCACTTCTTCAAAAAGCGGCACAAATGGGCTCAACCAGAAGCAACCCATCATTCTTTGGGAACAGTTTCGGATCAATGAACTCTTATAATTCCAATTCTTCTTCGCCGAGTTTTAACGTATTATCACAACAGAACAGATCGAATGAAAATGAATTGAACCAGGTTTTTAGGAAACAGGCGGAGAATTTACCGGCCGGGGAAGGAACAATGGAGAGAGTGAGGGAGAGAGAATTGACTAGGGATTTTTTGGGAATGGGAGGGGAAGGTGGAAGGCCATTGTTGCCACAAGAGATAGCTAAGTTAGCTTCAATGGGTTCATCAGGGATGGGGATGAGGTTGAGCCAATTCAATAGTAACCACTGA

Network for GWHGAAZE005629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	69	91	0.0049

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.121
	SRR3591706	second leaf	13.795
	SRR3591707	mature leaf	28.170
	SRR3591708	Shoot apex	23.188
	SRR3591709	Stem	4.285
	SRR3591710	White floral bud	4.796
	SRR3591711	White flower	5.094
	SRR3591712	Green floral bud	8.757
	SRR3591713	Yellow flower	3.510
SRP173429	SRR8316895	Juvenile bud stage	3.047
	SRR8316896	Juvenile bud stage	2.549
	SRR8316897	Juvenile bud stage	0.956
	SRR8316894	Third green stage	1.013
	SRR8316900	Third green stage	1.587
	SRR8316901	Third green stage	2.335
	SRR8316898	Complete white stage	0.631
	SRR8316899	Complete white stage	4.220
	SRR8316903	Complete white stage	2.267
	SRR8316902	Silver flowering stage	1.004
	SRR8316904	Silver flowering stage	1.197
	SRR8316905	Silver flowering stage	0.384
	SRR8316906	Gold flowering stage	1.146
	SRR8316907	Gold flowering stage	0.930
	SRR8316908	Gold flowering stage	1.096
SRP132670	SRR6706286	Control	2.576
	SRR6706287	Light intensity 50%	2.467
	SRR6706288	Light intensity 20%	2.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.030
	CNS0095593	Slightly white alabastrum(diploid) 2	2.396
	CNS0095594	Slightly white alabastrum(diploid) 3	4.944
	CNS0095595	Whole white alabastrum(diploid) 2	1.447
	CNS0095596	Whole white alabastrum(diploid) 3	1.423
	CNS0095597	Whole white alabastrum(diploid) 4	2.267
	CNS0095598	Silvery flower (diploied) 1	3.952
	CNS0095599	Silvery flower (diploied) 2	2.929
	CNS0095600	Silvery flower (diploied) 3	1.550
	CNS0095601	Golden flower (diploid) 1	1.400
	CNS0095602	Golden flower (diploid) 2	1.439
	CNS0095603	Golden flower (diploid) 3	1.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.815
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.474
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.530
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.770
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.684
	CNS0095610	Silvery flower (tetraploid) 1	2.222
	CNS0095611	Silvery flower (tetraploid) 2	3.655
	CNS0095612	Silvery flower (tetraploid) 3	2.108
	CNS0095613	Golden flower (tetraploid) 1	0.981
	CNS0095614	Golden flower (tetraploid) 2	1.501
	CNS0095615	Golden flower (tetraploid) 3	0.851
CRA001975	CRR073297	Stem 1	7.359
	CRR073298	Stem 2	6.091
	CRR073299	Stem 3	5.629
	CRR073300	Leaf 1	2.543
	CRR073301	Leaf 2	2.286
	CRR073302	Leaf 3	1.767
	CRR073303	Juvenile bud 1	2.179
	CRR073304	Juvenile bud 2	1.772
	CRR073305	Juvenile bud 3	3.262
	CRR073306	Third green 1	0.291
	CRR073307	Third green 2	0.755
	CRR073308	Third green 3	1.423
	CRR073309	Second white 1	0.864
	CRR073310	Second white 2	0.478
	CRR073311	Second white 3	0.845
	CRR073312	Silver flowering 1	0.595
	CRR073313	Silver flowering 2	0.394
	CRR073314	Silver flowering 3	0.393
	CRR073315	Gold flowering 1	23.810
	CRR073316	Gold flowering 2	36.998
	CRR073317	Gold flowering 3	24.578
	CRR073318	Tawny withering 1	3.527
	CRR073319	Tawny withering 2	2.286
	CRR073320	Tawny withering 3	1.183