Gene detail

Detail information of GWHGAAZE005621

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009598151.1	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LFH9\|LRK81_ARATH	L-type lectin-domain containing receptor kinase VIII.1 (Precursor)
trEMBL	tr\|B3XWM9\|B3XWM9_NICBE	Lectin receptor kinase-like protein {ECO:0000313\|EMBL:BAG68210.1}
TAIR10	AT5G03140.1	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10965563	10967677	-
GWHAAZE00000002	mRNA	10965563	10967677	-
GWHAAZE00000002	exon	10966918	10967677	-
GWHAAZE00000002	exon	10965563	10966881	-
GWHAAZE00000002	CDS	10966918	10967677	-
GWHAAZE00000002	CDS	10965563	10966881	-

Transcript Sequence
>GWHTAAZE005629 ATGTCATCAATTTCCCCCCTATATTTCTTCTTCTTCCTCTATTTTGCCTGCGTAACCGTCGGAACCACTGAATTCGACTTCGGTACTTTGACTCTAAGCAGCTTAAACCTCCTCGGCGACGCCCACTTCACCAACGACAAAGTGAGACTCACGCGCGACCTCGCAGTCCCCAACTCCGGAGCCGGCCAAGTCCTTTACTCCAAACCAATCAAATTCCGGCAACCAGGCTCCAAGATACCGGCGAGCTTCAATTCTTTCTTCTCCTTCTCCGTCACAAACCTCAACCCATCATCGATCGGCGGAGGCCTCGCCTTTATCATCTCATCGGATGACCAGACAGTCGGCGACGCCGGCCCGTACCTTGGTTTGATGGGCGACGGAGGACAACGCGCCGTCGTGGCGGTGGAGTTCGACACCCTAATGGACGTAGAATTTAAAGACATCAATGGGAACCACGTGGGTTTGGATCTGAACTCAATGATTTCAACCCAAGTCGCCGATTTGGATATAATCGGCGTTGATCTGAAAAGTGGGGACCTGGTCAACTCCTGGATCGACTACTCCGGGTCAACTCAGTGCTTCAACATATCTGTTTCTTATTCAAATCTTAAACCCAAAGAACCCCTTTTATCCTTCACTCTCGATCTTAATCAATATGTGAATGATTTCATGTTTGTTGGGTTCTCTGGCTCAACACAGGGGAGTACAGAAACTCACACAATTGAATGGTGGAGTTTTAGTTCATCTTTTGATTCTAAATCTAGTTTGGATAATCCAACAGCTAATTCTGCTAACCCAACACCTCCTTCATTGGCTCCATCAGAATCAAATAATAGCTCAATTTCACATACCTCAGAGAAGAACAGTAAGTGCCACAATCAATTCTGTAAACAGGGCCCTGGTGCTGTTGTTGGGGTAGTAACAGCAGGGGCATTTGTATTAGCCTTATTTGCTGTTGTCCTAATTTGGGTCTACTCCAAAAAATTCAAGAAATTCAAGAAATCAGAGCATTTGGGTTCCGATTTCATCAAAATGCCCAAAGAATTTAGCTACAAAGACCTTAAATTAGCCACAAAATACTTCAATGCGTCTCGAATTATCGGTCACGGTGCATTTGGTACTGTCTATAAGGGGATTTTACCGGAGACTGGTGACATTATCGCGGTTAAGAGATGTAGCCATAATGGACAAGGGAAAGCAGAGTTCTTATCTGAATTATCCATAATTGGGACCCTTAGGCATAGAAATCTTGTTAGGTTGCAAGGCTGGTGCCACGAGAAAGGTGAAATCTTGCTAGTATATGACTTTATGCCTAATGGGAGTCTTGATAAGGCACTGTTTGAATCAAGAATGCCATTGCCATGGACCCACAGAAGAAAAATACTTATGGGTGTTGCTTCTGCATTGGCCTATTTGCATCAGGAATGTGAAACCCAGGTGATCCATAGGGATGTGAAGAGTAGTAACATAATGTTGGATGAAGGTTTCAACGCCAAATTAGGCGATTTTGGGTTAGCCAGGCAAATCGAGCACGATAAGTCACCGGATGCCACGGTTGCAGCTGGTACAATGGGGTACTTAGCCCCCGAGTATTTATTGACAGGAAGGGCTAGTGAGAAGTCTGATGTTTTTAGCTTTGGGGCAGTGGTGTTAGAGGTGGCTAGTGGGAGGAGACCCATTGAGAAAGAGGCTAGTGGGGTGAGCAAAATTGGGGCTAATAGTAGTAGTAATTTAGTTGAATGGGTGTGGAGTTTGCATAGAGAAGGGAGGTTGTTGATGGCAGCTGATTCAAGGCTTGGGGCTGAGTTTGATGAAGAAGACATGAGGAAAGTGTTGTTTGTGGGGTTGGTTTGTTCTCACCCTGACCCAATGGTTAGACCCACAATGAGGGGTGTGGTTCAAATGCTTGTGGGTGAGGCTGAGGTGCCTATTGTACCGAGGACTAAGCCAGCCTTGAGTTTTAGCACCTCTCATTTGCTGCTTAATTTGCAGGACAGTGTGTCTGATTTGAATGGTATGATTACAATTTCCACTTCCTCTTCAGAAAACAGCCTCACTGGTGGGGTGGAATTAGTATGA

Network for GWHGAAZE005621

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	24	259	7.70E-56
PF00069.26	Pkinase	362	634	3.60E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.416
	SRR3591706	second leaf	15.834
	SRR3591707	mature leaf	14.205
	SRR3591708	Shoot apex	17.057
	SRR3591709	Stem	9.916
	SRR3591710	White floral bud	7.809
	SRR3591711	White flower	7.785
	SRR3591712	Green floral bud	8.117
	SRR3591713	Yellow flower	2.528
SRP173429	SRR8316895	Juvenile bud stage	5.192
	SRR8316896	Juvenile bud stage	4.120
	SRR8316897	Juvenile bud stage	2.162
	SRR8316894	Third green stage	2.388
	SRR8316900	Third green stage	4.932
	SRR8316901	Third green stage	3.655
	SRR8316898	Complete white stage	1.501
	SRR8316899	Complete white stage	6.783
	SRR8316903	Complete white stage	3.004
	SRR8316902	Silver flowering stage	1.506
	SRR8316904	Silver flowering stage	2.011
	SRR8316905	Silver flowering stage	1.144
	SRR8316906	Gold flowering stage	1.586
	SRR8316907	Gold flowering stage	3.182
	SRR8316908	Gold flowering stage	5.202
SRP132670	SRR6706286	Control	7.430
	SRR6706287	Light intensity 50%	8.712
	SRR6706288	Light intensity 20%	9.635
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.759
	CNS0095593	Slightly white alabastrum(diploid) 2	3.775
	CNS0095594	Slightly white alabastrum(diploid) 3	2.960
	CNS0095595	Whole white alabastrum(diploid) 2	2.668
	CNS0095596	Whole white alabastrum(diploid) 3	1.689
	CNS0095597	Whole white alabastrum(diploid) 4	3.373
	CNS0095598	Silvery flower (diploied) 1	7.521
	CNS0095599	Silvery flower (diploied) 2	4.965
	CNS0095600	Silvery flower (diploied) 3	4.363
	CNS0095601	Golden flower (diploid) 1	3.634
	CNS0095602	Golden flower (diploid) 2	5.093
	CNS0095603	Golden flower (diploid) 3	5.104
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.714
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.601
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.791
	CNS0095610	Silvery flower (tetraploid) 1	3.515
	CNS0095611	Silvery flower (tetraploid) 2	3.648
	CNS0095612	Silvery flower (tetraploid) 3	3.980
	CNS0095613	Golden flower (tetraploid) 1	1.247
	CNS0095614	Golden flower (tetraploid) 2	2.713
	CNS0095615	Golden flower (tetraploid) 3	1.268
CRA001975	CRR073297	Stem 1	7.120
	CRR073298	Stem 2	6.089
	CRR073299	Stem 3	6.356
	CRR073300	Leaf 1	6.191
	CRR073301	Leaf 2	5.089
	CRR073302	Leaf 3	4.981
	CRR073303	Juvenile bud 1	5.662
	CRR073304	Juvenile bud 2	2.976
	CRR073305	Juvenile bud 3	9.313
	CRR073306	Third green 1	0.904
	CRR073307	Third green 2	1.403
	CRR073308	Third green 3	1.711
	CRR073309	Second white 1	0.463
	CRR073310	Second white 2	0.150
	CRR073311	Second white 3	0.302
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.505
	CRR073314	Silver flowering 3	0.415
	CRR073315	Gold flowering 1	7.161
	CRR073316	Gold flowering 2	9.010
	CRR073317	Gold flowering 3	5.394
	CRR073318	Tawny withering 1	9.141
	CRR073319	Tawny withering 2	3.867
	CRR073320	Tawny withering 3	9.881