Gene detail

Detail information of GWHGAAZE005609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008442638.1	4.53067E-88	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2 [Cucumis melo]
Swissprot	tr\|Q8VYK4\|NFYB8_ARATH	6E-67	Nuclear transcription factor Y subunit B-8
trEMBL	tr\|S6DEZ2\|S6DEZ2_CUCSA	2E-88	Nuclear transcription factor Y subunit B-8-like {ECO:0000313\|EMBL:CDF47513.1}
TAIR10	AT2G37060.3	2E-53	nuclear factor Y, subunit B8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10684049	10686058	+
GWHAAZE00000002	mRNA	10684049	10686058	+
GWHAAZE00000002	exon	10684049	10684263	+
GWHAAZE00000002	exon	10684451	10684580	+
GWHAAZE00000002	exon	10685219	10685278	+
GWHAAZE00000002	exon	10685985	10686058	+
GWHAAZE00000002	CDS	10684049	10684263	+
GWHAAZE00000002	CDS	10684451	10684580	+
GWHAAZE00000002	CDS	10685219	10685278	+
GWHAAZE00000002	CDS	10685985	10686029	+
GWHAAZE00000002	three_prime_UTR	10686030	10686058	+

Transcript Sequence
>GWHTAAZE005617 ATGGCGGACAATCCGGCGAGTCCCGGCGGTGGAAGCCACGAGAGCGGCGATCTGAGCTCGGGGTCAAACGTTCGAGAGCAAGACAGGTACCTCCCAATTGCAAACATCAGTAGGATCATGAAGAAGGCTCTTCCGGCCAATGGAAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGTGTCTCCGAGTTCATCAGTTTTGTTACCAGCGAGGCAAGTGATAAGTGCCAGAGAGAGAAGAGGAAAACGATTAATGGTGATGATCTGCTCTGGGCAATGGCCACTCTAGGGTTCGAAGATTATATTGATCCTCTCAAGGTTTATTTGGTTAAATTCAGAGAGGGTGTTCAGCTGGCTCATCAAGGTTCATTCTCACAAGGTTTGAACTATGGGACCTCTCAGCCTCAGACTCAACATATGATGGTTCCTATGCAACGCACAGAGTAGAATCAAATCCATAATATAACTGTCTCGTT

Network for GWHGAAZE005609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00808.24	CBFD_NFYB_HMF	30	94	8.70E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	pathway	mapID
K08065	NFYB, HAP3	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.419
	SRR3591706	second leaf	22.072
	SRR3591707	mature leaf	17.793
	SRR3591708	Shoot apex	40.400
	SRR3591709	Stem	33.771
	SRR3591710	White floral bud	163.111
	SRR3591711	White flower	125.126
	SRR3591712	Green floral bud	34.115
	SRR3591713	Yellow flower	327.477
SRP173429	SRR8316895	Juvenile bud stage	29.474
	SRR8316896	Juvenile bud stage	32.520
	SRR8316897	Juvenile bud stage	27.099
	SRR8316894	Third green stage	13.013
	SRR8316900	Third green stage	25.920
	SRR8316901	Third green stage	33.495
	SRR8316898	Complete white stage	58.759
	SRR8316899	Complete white stage	52.255
	SRR8316903	Complete white stage	121.630
	SRR8316902	Silver flowering stage	47.977
	SRR8316904	Silver flowering stage	53.933
	SRR8316905	Silver flowering stage	38.329
	SRR8316906	Gold flowering stage	88.872
	SRR8316907	Gold flowering stage	72.413
	SRR8316908	Gold flowering stage	129.880
SRP132670	SRR6706286	Control	36.099
	SRR6706287	Light intensity 50%	41.728
	SRR6706288	Light intensity 20%	32.363
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.591
	CNS0095593	Slightly white alabastrum(diploid) 2	37.633
	CNS0095594	Slightly white alabastrum(diploid) 3	38.067
	CNS0095595	Whole white alabastrum(diploid) 2	33.611
	CNS0095596	Whole white alabastrum(diploid) 3	22.281
	CNS0095597	Whole white alabastrum(diploid) 4	25.606
	CNS0095598	Silvery flower (diploied) 1	87.687
	CNS0095599	Silvery flower (diploied) 2	71.987
	CNS0095600	Silvery flower (diploied) 3	85.078
	CNS0095601	Golden flower (diploid) 1	73.303
	CNS0095602	Golden flower (diploid) 2	81.404
	CNS0095603	Golden flower (diploid) 3	70.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.787
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.872
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.424
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.597
	CNS0095610	Silvery flower (tetraploid) 1	148.697
	CNS0095611	Silvery flower (tetraploid) 2	88.517
	CNS0095612	Silvery flower (tetraploid) 3	324.872
	CNS0095613	Golden flower (tetraploid) 1	100.567
	CNS0095614	Golden flower (tetraploid) 2	75.470
	CNS0095615	Golden flower (tetraploid) 3	132.166
CRA001975	CRR073297	Stem 1	53.397
	CRR073298	Stem 2	47.486
	CRR073299	Stem 3	30.003
	CRR073300	Leaf 1	48.634
	CRR073301	Leaf 2	55.327
	CRR073302	Leaf 3	23.246
	CRR073303	Juvenile bud 1	33.865
	CRR073304	Juvenile bud 2	24.465
	CRR073305	Juvenile bud 3	33.439
	CRR073306	Third green 1	154.890
	CRR073307	Third green 2	190.134
	CRR073308	Third green 3	144.084
	CRR073309	Second white 1	76.102
	CRR073310	Second white 2	66.633
	CRR073311	Second white 3	51.861
	CRR073312	Silver flowering 1	51.515
	CRR073313	Silver flowering 2	69.894
	CRR073314	Silver flowering 3	56.253
	CRR073315	Gold flowering 1	9.852
	CRR073316	Gold flowering 2	11.631
	CRR073317	Gold flowering 3	5.714
	CRR073318	Tawny withering 1	18.853
	CRR073319	Tawny withering 2	15.678
	CRR073320	Tawny withering 3	15.991