Gene detail

Detail information of GWHGAAZE005585

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027153.1	6.6371E-102	RNA-binding family protein with retrovirus zinc finger-like domain, putative [Theobroma cacao]
Swissprot	tr\|Q9FYB7\|RSZ32_ARATH	9E-63	Serine/arginine-rich splicing factor RS2Z32
trEMBL	tr\|A0A061ERP0\|A0A061ERP0_THECC	2E-102	RNA-binding family protein with retrovirus zinc finger-like domain, putative {ECO:0000313\|EMBL:EOY07655.1}
TAIR10	AT3G53500.2	9E-41	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10358217	10361043	+
GWHAAZE00000002	mRNA	10358217	10361043	+
GWHAAZE00000002	exon	10358217	10358323	+
GWHAAZE00000002	exon	10358767	10358887	+
GWHAAZE00000002	exon	10358964	10359053	+
GWHAAZE00000002	exon	10359219	10359314	+
GWHAAZE00000002	exon	10359532	10359728	+
GWHAAZE00000002	exon	10359988	10360089	+
GWHAAZE00000002	exon	10360519	10361043	+
GWHAAZE00000002	CDS	10358217	10358323	+
GWHAAZE00000002	CDS	10358767	10358887	+
GWHAAZE00000002	CDS	10358964	10359053	+
GWHAAZE00000002	CDS	10359219	10359314	+
GWHAAZE00000002	CDS	10359532	10359728	+
GWHAAZE00000002	CDS	10359988	10360089	+
GWHAAZE00000002	CDS	10360519	10360927	+
GWHAAZE00000002	three_prime_UTR	10360928	10361043	+

Transcript Sequence
>GWHTAAZE005593 ATGCGTCGTTATGATGATCGATATGGTGGTAATCGTCTATATGTCGGTCACTTGTCTTCACGGACTCGTTCTCGTGACCTGGAGCGCATCTTCAGCAGATATGGGAGGTTTCTGGGGATTTTGCCTGACCTGGCGGTCAATGGTGAGAGGGAGGCCATGATGGAATTGGTGGAAAGTCTTGCTGAGTGTTGGGAGAATTTGGCGATTCTTTCTATAGTGTTATTGCATTTCTTAAGTAATGATGATGGCCTTATTGTTTGTGGCAACCATTTCCGCAGAGTACGAGATGTGGATATGAAGCACGACTTTGCCTTCGTAGATTTTAGTGATCCTCGGGACGCTGATGATGCAAGATATAGCTTGAATGGCCGAGAACTTGCTGGGAGTCGTCTTATAGTGGAGTTTGCTAAGGGGGCTCCACGTGGACCTGGTGGTTCTCGAGATTCTCTGGGTAGGGGTCCACCACCTGGTTCTGGACGCTGCTTTAATTGTGGCCTCGATGGTCACTGGGCTCGAGATTGTAAGGCTGGCGACTGGAAAAATAAGTGTTATCGCTGTGGAGACAGAGGTCACATTGAAAGAAACTGCCAGAACAGTCCTAAGAAGCTCAGACGTGGCCGGAGTTACTCAAGATCGCCGGTGAGATCATGCTCTCCTAGACATGGTAGAGGTAGAAGCAGAAGTCAAAGTTATAGCCGAAGTCGAAGCTATAGTCGATCCAGATCCCCTCAAAAGAGGGACTACAGTGTGGAGCGAGAGAAGAGATCAAGGAGCCCTAGCTACAGCAGAAGCCCCAAACCGCGGGATTCTCCACCTCCATCCAAGGAAAGGATGTGCAGTCCAACACCTGGTGATGATGAGGGCAGCCCAATGGAGAAGCGTAGTCCTTCTCTGAAGATTAGCATTGCAGCTGTGCAGGATGGTGAGAGCCCTCCACGGGGGAAAGGTACAAGCGCTGTGGGTCCTGAAAACAATAGCCCTGTTACCAAGGGCCCTGAGAGCCCCTCTGAAGCTAACGGTCGAAGCCTCAGCCCTAACCCTAGAGGTGATGACAGAAGCCCAGTTGATGATGATGATGATGATGATAATAACCGCTTTTCCAGAGGCAGCGAGTCATCTTAAATTTGCATTGAAGGGCAAAATTAAGGGGTGCTACTAATAATTGATCTTTCCTGCCTTTTATTTGATCTATTTTTGTGACATTGTTATAAAGTACCTTCTCCTAAGAAAGAAATGAA

Network for GWHGAAZE005585

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	94	131	1.00E-05
PF00098.24	zf-CCHC	160	175	1.50E-05
PF00098.24	zf-CCHC	181	197	0.00061

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.604
	SRR3591706	second leaf	26.018
	SRR3591707	mature leaf	18.607
	SRR3591708	Shoot apex	30.016
	SRR3591709	Stem	19.285
	SRR3591710	White floral bud	18.241
	SRR3591711	White flower	19.364
	SRR3591712	Green floral bud	17.042
	SRR3591713	Yellow flower	17.340
SRP173429	SRR8316895	Juvenile bud stage	18.912
	SRR8316896	Juvenile bud stage	27.127
	SRR8316897	Juvenile bud stage	12.507
	SRR8316894	Third green stage	10.712
	SRR8316900	Third green stage	21.147
	SRR8316901	Third green stage	28.916
	SRR8316898	Complete white stage	14.719
	SRR8316899	Complete white stage	29.793
	SRR8316903	Complete white stage	24.370
	SRR8316902	Silver flowering stage	11.300
	SRR8316904	Silver flowering stage	13.781
	SRR8316905	Silver flowering stage	6.217
	SRR8316906	Gold flowering stage	13.305
	SRR8316907	Gold flowering stage	17.728
	SRR8316908	Gold flowering stage	18.306
SRP132670	SRR6706286	Control	19.855
	SRR6706287	Light intensity 50%	20.391
	SRR6706288	Light intensity 20%	22.750
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.682
	CNS0095593	Slightly white alabastrum(diploid) 2	34.096
	CNS0095594	Slightly white alabastrum(diploid) 3	34.369
	CNS0095595	Whole white alabastrum(diploid) 2	25.058
	CNS0095596	Whole white alabastrum(diploid) 3	24.282
	CNS0095597	Whole white alabastrum(diploid) 4	20.459
	CNS0095598	Silvery flower (diploied) 1	29.043
	CNS0095599	Silvery flower (diploied) 2	21.564
	CNS0095600	Silvery flower (diploied) 3	12.759
	CNS0095601	Golden flower (diploid) 1	19.905
	CNS0095602	Golden flower (diploid) 2	9.578
	CNS0095603	Golden flower (diploid) 3	10.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.763
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.806
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.548
	CNS0095610	Silvery flower (tetraploid) 1	23.333
	CNS0095611	Silvery flower (tetraploid) 2	12.529
	CNS0095612	Silvery flower (tetraploid) 3	15.041
	CNS0095613	Golden flower (tetraploid) 1	18.325
	CNS0095614	Golden flower (tetraploid) 2	18.229
	CNS0095615	Golden flower (tetraploid) 3	8.458
CRA001975	CRR073297	Stem 1	28.104
	CRR073298	Stem 2	24.390
	CRR073299	Stem 3	12.946
	CRR073300	Leaf 1	24.742
	CRR073301	Leaf 2	29.259
	CRR073302	Leaf 3	11.266
	CRR073303	Juvenile bud 1	12.877
	CRR073304	Juvenile bud 2	5.745
	CRR073305	Juvenile bud 3	8.251
	CRR073306	Third green 1	3.952
	CRR073307	Third green 2	2.670
	CRR073308	Third green 3	5.036
	CRR073309	Second white 1	1.219
	CRR073310	Second white 2	1.992
	CRR073311	Second white 3	1.655
	CRR073312	Silver flowering 1	0.715
	CRR073313	Silver flowering 2	0.518
	CRR073314	Silver flowering 3	0.964
	CRR073315	Gold flowering 1	6.649
	CRR073316	Gold flowering 2	9.891
	CRR073317	Gold flowering 3	5.387
	CRR073318	Tawny withering 1	11.200
	CRR073319	Tawny withering 2	10.353
	CRR073320	Tawny withering 3	8.579