Detail information of GWHGAAZE005582


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002274246.10PREDICTED: phosphatidate phosphatase PAH1 isoform X2 [Vitis vinifera]
Swissprottr|Q9SF47|PAH1_ARATH0Phosphatidate phosphatase PAH1
trEMBLtr|F6HQX3|F6HQX3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57022.1}
TAIR10AT3G09560.30Lipin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1029831710303763-
GWHAAZE00000002mRNA1029831710303763-
GWHAAZE00000002exon1029831710298376-
GWHAAZE00000002exon1029848310298581-
GWHAAZE00000002exon1029889910299027-
GWHAAZE00000002exon1029911810299161-
GWHAAZE00000002exon1029971210299784-
GWHAAZE00000002exon1029991210299998-
GWHAAZE00000002exon1030083010300914-
GWHAAZE00000002exon1030116510301238-
GWHAAZE00000002exon1030133910301907-
GWHAAZE00000002exon1030237110303763-
GWHAAZE00000002CDS1030237110303763-
GWHAAZE00000002CDS1030133910301907-
GWHAAZE00000002CDS1030116510301238-
GWHAAZE00000002CDS1030083010300914-
GWHAAZE00000002CDS1029991210299998-
GWHAAZE00000002CDS1029971210299784-
GWHAAZE00000002CDS1029911810299161-
GWHAAZE00000002CDS1029889910299027-
GWHAAZE00000002CDS1029848310298581-
GWHAAZE00000002CDS1029831710298376-
Transcript Sequence

Network for GWHGAAZE005582

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04571.15Lipin_N1971.10E-30
PF16876.6Lipin_mid4675501.20E-12
PF08235.14LNS26238441.50E-94
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15728LPIN Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.648
SRR3591706second leaf9.768
SRR3591707mature leaf10.279
SRR3591708Shoot apex10.863
SRR3591709Stem8.997
SRR3591710White floral bud13.752
SRR3591711White flower16.686
SRR3591712Green floral bud11.801
SRR3591713Yellow flower15.784
SRP173429 SRR8316895Juvenile bud stage 9.447
SRR8316896Juvenile bud stage 12.218
SRR8316897Juvenile bud stage 6.435
SRR8316894Third green stage 5.471
SRR8316900Third green stage 14.217
SRR8316901Third green stage 13.056
SRR8316898Complete white stage 7.314
SRR8316899Complete white stage 17.887
SRR8316903Complete white stage 11.964
SRR8316902Silver flowering stage6.335
SRR8316904Silver flowering stage10.296
SRR8316905Silver flowering stage4.373
SRR8316906Gold flowering stage 13.406
SRR8316907Gold flowering stage 12.132
SRR8316908Gold flowering stage 12.369
SRP132670SRR6706286Control11.923
SRR6706287Light intensity 50%12.710
SRR6706288Light intensity 20%12.291
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.473
CNS0095593Slightly white alabastrum(diploid) 28.912
CNS0095594Slightly white alabastrum(diploid) 310.143
CNS0095595Whole white alabastrum(diploid) 29.483
CNS0095596Whole white alabastrum(diploid) 39.156
CNS0095597Whole white alabastrum(diploid) 46.447
CNS0095598Silvery flower (diploied) 19.442
CNS0095599Silvery flower (diploied) 28.426
CNS0095600Silvery flower (diploied) 315.547
CNS0095601Golden flower (diploid) 19.715
CNS0095602Golden flower (diploid) 213.426
CNS0095603Golden flower (diploid) 312.614
CNS0095604Slightly white alabastrum(tetraploid) 110.911
CNS0095605Slightly white alabastrum(tetraploid) 210.374
CNS0095606Slightly white alabastrum(tetraploid) 317.146
CNS0095607Whole white alabastrum(tetraploid) 16.933
CNS0095608Whole white alabastrum(tetraploid) 26.082
CNS0095609Whole white alabastrum(tetraploid) 313.414
CNS0095610Silvery flower (tetraploid) 115.180
CNS0095611Silvery flower (tetraploid) 214.668
CNS0095612Silvery flower (tetraploid) 317.384
CNS0095613Golden flower (tetraploid) 18.316
CNS0095614Golden flower (tetraploid) 29.688
CNS0095615Golden flower (tetraploid) 310.299
CRA001975CRR073297Stem 110.277
CRR073298Stem 28.833
CRR073299Stem 38.287
CRR073300Leaf 19.375
CRR073301Leaf 29.337
CRR073302Leaf 36.195
CRR073303Juvenile bud 17.539
CRR073304Juvenile bud 28.131
CRR073305Juvenile bud 310.107
CRR073306Third green 16.211
CRR073307Third green 25.946
CRR073308Third green 36.183
CRR073309Second white 16.516
CRR073310Second white 24.852
CRR073311Second white 35.412
CRR073312Silver flowering 14.560
CRR073313Silver flowering 24.608
CRR073314Silver flowering 32.848
CRR073315Gold flowering 18.611
CRR073316Gold flowering 211.440
CRR073317Gold flowering 36.118
CRR073318Tawny withering 14.950
CRR073319Tawny withering 27.520
CRR073320Tawny withering 33.751