Gene detail

Detail information of GWHGAAZE005558

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009769041.1	PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|B9SZB6\|ARGJ_RICCO	Arginine biosynthesis bifunctional protein ArgJ beta chain {ECO:0000255\|HAMAP-Rule:MF_03124} (Precursor)
trEMBL	tr\|M1AHA1\|M1AHA1_SOLTU	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03124}
TAIR10	AT2G37500.1	arginine biosynthesis protein ArgJ family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9968644	9980075	+
GWHAAZE00000002	mRNA	9968644	9980075	+
GWHAAZE00000002	exon	9968644	9968754	+
GWHAAZE00000002	exon	9968854	9968919	+
GWHAAZE00000002	exon	9969214	9969339	+
GWHAAZE00000002	exon	9972441	9972564	+
GWHAAZE00000002	exon	9972793	9972866	+
GWHAAZE00000002	exon	9973469	9973513	+
GWHAAZE00000002	exon	9973753	9973803	+
GWHAAZE00000002	exon	9973901	9973969	+
GWHAAZE00000002	exon	9974085	9974143	+
GWHAAZE00000002	exon	9974410	9974479	+
GWHAAZE00000002	exon	9974891	9974971	+
GWHAAZE00000002	exon	9975053	9975139	+
GWHAAZE00000002	exon	9975847	9975969	+
GWHAAZE00000002	exon	9976164	9976226	+
GWHAAZE00000002	exon	9976572	9976649	+
GWHAAZE00000002	exon	9976741	9976886	+
GWHAAZE00000002	exon	9977070	9977140	+
GWHAAZE00000002	exon	9979993	9980075	+
GWHAAZE00000002	CDS	9968644	9968754	+
GWHAAZE00000002	CDS	9968854	9968919	+
GWHAAZE00000002	CDS	9969214	9969339	+
GWHAAZE00000002	CDS	9972441	9972564	+
GWHAAZE00000002	CDS	9972793	9972866	+
GWHAAZE00000002	CDS	9973469	9973513	+
GWHAAZE00000002	CDS	9973753	9973803	+
GWHAAZE00000002	CDS	9973901	9973969	+
GWHAAZE00000002	CDS	9974085	9974143	+
GWHAAZE00000002	CDS	9974410	9974479	+
GWHAAZE00000002	CDS	9974891	9974971	+
GWHAAZE00000002	CDS	9975053	9975139	+
GWHAAZE00000002	CDS	9975847	9975969	+
GWHAAZE00000002	CDS	9976164	9976226	+
GWHAAZE00000002	CDS	9976572	9976649	+
GWHAAZE00000002	CDS	9976741	9976886	+
GWHAAZE00000002	CDS	9977070	9977140	+
GWHAAZE00000002	CDS	9979993	9980075	+

Transcript Sequence
>GWHTAAZE005566 ATGTCTACCTGCATTCCTCAATTCGCTTCTATCAGATATTCAGAACTTAATGCCCCAAAGGTAAAGTATCTCTTCCTTAAACATCGCTCCCTGGAATCTCCTTTAGCGATTTTTGCCCCAGCGAAAACACTAAATTGCTTCCGGTTGAACAATACAGAAACGAAACTTGCTACTTCGATTCTGGGCTCCTTTTGTAGTCATCGTAGAGATCTTAGGGTGGTGTCTGCATCATCAGTTATGAATGATTTGTCAAATTACATACCAGCTGCTCCAATATTTCTGCCTGAAGGGCCATGGAAGCAGATTCCAGGGGGAGTTACTGCTGCAGAGGGATTTAAAGCTGCAGGGATGTATGGGGGTTTGCGTGCTAAAGGAGAGAAGCCTGATCTTGCACTCGTTACTTGTGATGTGGATGCCATATATGCAGGGGCATTCACCACAAATGTGGTTGCAGCTGCACCAGTAGTGTATTGCAAAAGTGTATTAGACAATTCGACAACGGCTCGTGCGGTGTTAATAAATGCTGGTCAAGCCAATGCAGCAACTGGAGATGCAGGTTACCAGGATGTGATAGAATGTTCAAATGCTCTAGCTAAGCTACTCCAACTGAAGCCACATGAAGTGCTGATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAGAAGGAAGCTCTTCTTAATTCACTCCCGAAACTAGTTAATTTTCTATCATCGACTGTTAAGGGGGCAGACTCTGCTGCTGTGGCAATAACCACCACCGACCTTGTGAGCAAGAGTGTGGCAATTGAATCGGAGGTTGGAGGGACTTGCATAAGAGTTGGCGGGATGGCAAAAGGTTCGGGGATGATCCATCCTAATATGGCTACAATGCTTGGTGTTATAACAACAGATGCCCTGGTAACTAGAGATGTTTGGAGAAAGATGGTGCAAGTTGCTGTGAACCGCAGTTTTAACCAAATTACTGTGGATGGAGATACAAGTACTAATGATGCTGTTATTGCTTTGGCTAGTGGTCTATCTGGATCAAGCAAGATTTCTTCTATGGATATGGCTGATGCAAAAAAATTACAAGCATGCCTTGATGCAGTTATGCAGGGTCTTGCAAAATCAATAGCTTGGGATGGAGAGGGAGCGACATGCCTTATTGAGGTCACAGTAACAGGTGCAGGAAGTGAAGCCGAAGCAGCAAAAATTGCACGCTCGGTAGCATCTTCTTCACTTGCCAAGGCTGCTGTATTTGGCCGAGATCCAAATTGGGGTCGCATTGCTTGTGCTGCTGGCTATGCGGGAATTCCTTTCAACCAAAACGAACTCAGAATATCACTTGGGGATATTCTGCTTATGGACGGTGGCCAGCCTCTTCCATTTGATAGGGATGCCGCTAGTAATTATCTCCAAAAGGCCGGGGAGGTCCATGGTACGGTTGAAATTCAAATTTCCATAGGTGATGGACCAGGAAGTGGAGTAGCATGGGGCTGTGATCTAAGTTATGATTATGTAAAAATAAACGCAGAGTACACAACATAG

Network for GWHGAAZE005558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01960.19	ArgJ	114	508	5.70E-140

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00620	argJ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	biological_process	arginine biosynthetic process
GO:0004358	molecular_function	glutamate N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.887
	SRR3591706	second leaf	25.164
	SRR3591707	mature leaf	19.848
	SRR3591708	Shoot apex	44.673
	SRR3591709	Stem	30.845
	SRR3591710	White floral bud	22.902
	SRR3591711	White flower	22.528
	SRR3591712	Green floral bud	32.592
	SRR3591713	Yellow flower	21.646
SRP173429	SRR8316895	Juvenile bud stage	23.245
	SRR8316896	Juvenile bud stage	32.356
	SRR8316897	Juvenile bud stage	15.652
	SRR8316894	Third green stage	12.378
	SRR8316900	Third green stage	37.760
	SRR8316901	Third green stage	37.643
	SRR8316898	Complete white stage	13.111
	SRR8316899	Complete white stage	46.327
	SRR8316903	Complete white stage	18.747
	SRR8316902	Silver flowering stage	9.079
	SRR8316904	Silver flowering stage	12.328
	SRR8316905	Silver flowering stage	6.355
	SRR8316906	Gold flowering stage	19.664
	SRR8316907	Gold flowering stage	24.116
	SRR8316908	Gold flowering stage	21.068
SRP132670	SRR6706286	Control	43.355
	SRR6706287	Light intensity 50%	42.977
	SRR6706288	Light intensity 20%	46.925
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.434
	CNS0095593	Slightly white alabastrum(diploid) 2	39.433
	CNS0095594	Slightly white alabastrum(diploid) 3	31.866
	CNS0095595	Whole white alabastrum(diploid) 2	28.240
	CNS0095596	Whole white alabastrum(diploid) 3	25.902
	CNS0095597	Whole white alabastrum(diploid) 4	27.234
	CNS0095598	Silvery flower (diploied) 1	31.629
	CNS0095599	Silvery flower (diploied) 2	26.371
	CNS0095600	Silvery flower (diploied) 3	22.208
	CNS0095601	Golden flower (diploid) 1	27.549
	CNS0095602	Golden flower (diploid) 2	21.653
	CNS0095603	Golden flower (diploid) 3	19.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.387
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.533
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.264
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.864
	CNS0095610	Silvery flower (tetraploid) 1	18.323
	CNS0095611	Silvery flower (tetraploid) 2	20.061
	CNS0095612	Silvery flower (tetraploid) 3	17.827
	CNS0095613	Golden flower (tetraploid) 1	9.079
	CNS0095614	Golden flower (tetraploid) 2	14.807
	CNS0095615	Golden flower (tetraploid) 3	6.062
CRA001975	CRR073297	Stem 1	35.368
	CRR073298	Stem 2	34.692
	CRR073299	Stem 3	22.034
	CRR073300	Leaf 1	38.252
	CRR073301	Leaf 2	40.120
	CRR073302	Leaf 3	24.860
	CRR073303	Juvenile bud 1	32.515
	CRR073304	Juvenile bud 2	26.477
	CRR073305	Juvenile bud 3	33.929
	CRR073306	Third green 1	8.832
	CRR073307	Third green 2	7.358
	CRR073308	Third green 3	9.988
	CRR073309	Second white 1	12.728
	CRR073310	Second white 2	8.892
	CRR073311	Second white 3	8.322
	CRR073312	Silver flowering 1	9.129
	CRR073313	Silver flowering 2	11.630
	CRR073314	Silver flowering 3	7.600
	CRR073315	Gold flowering 1	15.085
	CRR073316	Gold flowering 2	17.746
	CRR073317	Gold flowering 3	10.414
	CRR073318	Tawny withering 1	18.534
	CRR073319	Tawny withering 2	20.400
	CRR073320	Tawny withering 3	23.753