Gene detail

Detail information of GWHGAAZE005551

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06636.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|O80925\|AGD7_ARATH	0	ADP-ribosylation factor GTPase-activating protein AGD7
trEMBL	tr\|A0A068UDS4\|A0A068UDS4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06636.1}
TAIR10	AT2G37550.2	5E-147	ARF-GAP domain 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9868490	9876558	-
GWHAAZE00000002	mRNA	9868490	9876558	-
GWHAAZE00000002	exon	9875773	9876558	-
GWHAAZE00000002	exon	9875613	9875690	-
GWHAAZE00000002	exon	9868490	9869026	-
GWHAAZE00000002	CDS	9875773	9876558	-
GWHAAZE00000002	CDS	9875613	9875690	-
GWHAAZE00000002	CDS	9868490	9869026	-

Transcript Sequence
>GWHTAAZE005559 ATGTCGGCATCACGACGACTCCGAGAGTTACAATCCCGTCCGGGGAACAAAACCTGCGTCGATTGTTCACAGAAGAATCCACAGTGGGCATCGGTCTCCTACGGTATTTTCATGTGTTTAGAGTGCTCCGGTAAACACCGTGGCCTCGGTGTTCACATCTCGTTCGTCCGATCCGTCACCATGGACTCTTGGTCGGAGATCCAGCTCAAAAAAATGGAATCCGGTGGTAACGAACAGCTCAATCAATTCCTCTCTCAGTACGGTATCCCTAAAGAGACCGATATAGTCACTAAATATAATACAAACGCTGCTTCTGTATATCGAGATCGAATCCAAACCCTAGCTGAAGGTCGACCCTGGCGGGACCCTCCGGTTGTTAAGGAAGGTGGTGCTAATAAGAACAAGAAGCCTCCATTGAGTGGTGGTGTTAAGAATGGAGGTGAAGGATGGGATAGTTGGGATAGTTTTGATGATGGAGGGGTCAGATCGGGTCCAGATATTAGAAGGAATCAATCTGCGGGGGATTTTAGGAGCGGGGGAGGTGGTGGCGTTGTTCCGGCCAGGTCGAAATCGACTGAGGATATATATACGAGAGCGCAATTGGAGGCTTCGGCTTCAAATAAGGAGAGTTTTTTTGCAAAGAAGATGATGGAGAATGAGTCTAGGCCGAATGGATTGCCGCCGAGTCAAGGGGGAAAGTATGTAGGGTTTGGATCGTCTCCAGCTCCTGCGACGGCGCTGAGGAATAATGCGCAGCAAGGGGATGTGCTTTCCGCTGTTACGCAGGGATTTGGTAGGTTATCTGTAGTTGCTGCATCTGCTGCCAATGTGGTTCAAGTTGGCACAAGGGAGCTTACTTCCAAGGTGAGGGAAGGGGGCTATGATCACAAGGTGAATGAAACTGTCAATGTTGTCACTGCAAAAACAACAGAGATTGGACAGAGAACATGGGGGATAATGAAAGGGGTGATGGCATTGGCTTCACAGAAAGTTGAAGAATACACGAAAGAAGGTGGTGGCAGCAGTGGGGGCTGGAAGAATGACAGCTGGCAACGAAATGAAAACCAGGGAAATGGGTATTATCAGGAGTTTGGACAGGACTCCAAAGGATGGAATAACTTTCCTGCTGGTGGTGGTTGTGGAGGGGGGCAGCCCTCATCTGGCGGCAACTTTAATTCCGTCAGCTCAGCCTCTTGGGATGATTGGGATTCAAACAATAATAACACCAAAGAAGTGTCCACAAAGGGGACTACACCGTCCCATAATGGGGACAGCTGGGCGGGCTGGGATGATGCTAAAGATGATGGATACGACAATTTCTACCAGAGCGCATCCGATAGTAAGTCTGTGGACCACAATGGGAAATCAGATTCCAATTGGACGGGGGGAGGCTTTGTCTGA

Network for GWHGAAZE005551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	5	100	2.80E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12492	ARFGAP1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.400
	SRR3591706	second leaf	5.548
	SRR3591707	mature leaf	4.385
	SRR3591708	Shoot apex	4.925
	SRR3591709	Stem	8.101
	SRR3591710	White floral bud	8.024
	SRR3591711	White flower	8.285
	SRR3591712	Green floral bud	8.129
	SRR3591713	Yellow flower	6.775
SRP173429	SRR8316895	Juvenile bud stage	28.065
	SRR8316896	Juvenile bud stage	41.495
	SRR8316897	Juvenile bud stage	20.467
	SRR8316894	Third green stage	20.946
	SRR8316900	Third green stage	61.584
	SRR8316901	Third green stage	67.657
	SRR8316898	Complete white stage	26.618
	SRR8316899	Complete white stage	79.634
	SRR8316903	Complete white stage	47.785
	SRR8316902	Silver flowering stage	22.036
	SRR8316904	Silver flowering stage	30.164
	SRR8316905	Silver flowering stage	19.348
	SRR8316906	Gold flowering stage	58.006
	SRR8316907	Gold flowering stage	57.809
	SRR8316908	Gold flowering stage	61.375
SRP132670	SRR6706286	Control	132.415
	SRR6706287	Light intensity 50%	134.356
	SRR6706288	Light intensity 20%	133.678
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.884
	CNS0095593	Slightly white alabastrum(diploid) 2	52.311
	CNS0095594	Slightly white alabastrum(diploid) 3	47.978
	CNS0095595	Whole white alabastrum(diploid) 2	57.051
	CNS0095596	Whole white alabastrum(diploid) 3	54.285
	CNS0095597	Whole white alabastrum(diploid) 4	67.027
	CNS0095598	Silvery flower (diploied) 1	34.766
	CNS0095599	Silvery flower (diploied) 2	37.597
	CNS0095600	Silvery flower (diploied) 3	47.116
	CNS0095601	Golden flower (diploid) 1	33.844
	CNS0095602	Golden flower (diploid) 2	46.846
	CNS0095603	Golden flower (diploid) 3	44.959
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.234
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	93.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.972
	CNS0095609	Whole white alabastrum(tetraploid) 3	95.501
	CNS0095610	Silvery flower (tetraploid) 1	62.081
	CNS0095611	Silvery flower (tetraploid) 2	48.525
	CNS0095612	Silvery flower (tetraploid) 3	58.006
	CNS0095613	Golden flower (tetraploid) 1	45.262
	CNS0095614	Golden flower (tetraploid) 2	63.103
	CNS0095615	Golden flower (tetraploid) 3	65.128
CRA001975	CRR073297	Stem 1	57.597
	CRR073298	Stem 2	60.134
	CRR073299	Stem 3	57.118
	CRR073300	Leaf 1	90.616
	CRR073301	Leaf 2	88.744
	CRR073302	Leaf 3	81.087
	CRR073303	Juvenile bud 1	84.899
	CRR073304	Juvenile bud 2	78.989
	CRR073305	Juvenile bud 3	103.272
	CRR073306	Third green 1	81.892
	CRR073307	Third green 2	62.941
	CRR073308	Third green 3	66.401
	CRR073309	Second white 1	58.921
	CRR073310	Second white 2	54.103
	CRR073311	Second white 3	46.026
	CRR073312	Silver flowering 1	47.916
	CRR073313	Silver flowering 2	54.238
	CRR073314	Silver flowering 3	45.505
	CRR073315	Gold flowering 1	13.860
	CRR073316	Gold flowering 2	17.606
	CRR073317	Gold flowering 3	19.854
	CRR073318	Tawny withering 1	50.688
	CRR073319	Tawny withering 2	36.497
	CRR073320	Tawny withering 3	50.373